BAC Information

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BAC

Clone NameMSMg01-322N10
Chromosome5 (Build37)
Map Location 14,583,824 - 14,584,309
singlet/doubletsinglet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322N10.T7 (MSMg01no322_n10.b1)MSMg01-322N10.TJ (MSMg01no322_n10.g1)
ACCAG441424AG441425
length751770
length of high quality
(start - end)		573 (45 - 617)179 (78 - 256)
definitionCHROMAT_FILE: MSMg01no322_n10.b1 PHD_FILE: MSMg01no322_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:53 2005CHROMAT_FILE: MSMg01no322_n10.g1 PHD_FILE: MSMg01no322_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAATATATTCTCTTATCTATAAACGTTAAAAGTTAGTTAAAAATG
ATGTTAAGTAATTGTCTTTAGAGCACTCTCTAAAACCATATGCCTCTTTA
AACCTCAGAATGCCTTTCTAAACATAGCAGTTTCTTAGACCTTTAGGAAT
GCACACATTCCATGATTATTCCTCCTTTTGTGAAATTAATTCAGTTCTCA
TATAGCATGATTGAAGATTTACTTCTCAAGCTTTGATGAAAGATGTTTGT
GTTTTCATTAATGTTATTTCCCTCTGGCTACAAAACAAAAGCAAAAACAA
GAACAAGGACCCAAGCAATAAATGGAAAAGAACAACAACAACAACAACAA
CAAAACCCAGAAACTTACACACTTTTAAATCTGCTGTTAACCAGAAAGTG
GAAATTATCTAGAGAGCATATGATAGCTGAGGTCGGTTCTCAAGTTATAG
AACGCTATACATAGCATTCTATACATATAGGAAGCTATACATGTAGAATA
ATAAATGGTAGTCATTCAACTCTCAATTTCAGGATTTTCTAGAGCACTGC
TCATATATCTAGGATATATCATCCTTATTAAAACCAAATTGAAAGTATAC
CATTTTAAAGCTCTCTTACATGTTGCTATATATGCACTATATGAAAGACT
TTAAACTTTCAATATTCTTCTACTTACCCCAAAGCAGAGCTGCACTCTAC
C

NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGGCTCAACAAGCTGAAGTG
CCCAAGTGAGGACACCTCAGTACCACTTGGAAGGGAGAAGAAAGCAATCA
CAAGTGGGGGAGGAAGGGAGGGACCTGGGAGGGAAAGTGCACAGAGGAGC
AGGGTGAGGGAGTTGGGAGGAGAGGGAAACCTAGTCTGGTATTGGGTGAG
GGAAAAGGACTGAAGTTCTGAATGCCCGCTGACAGTATGTAAACAGGCAC
CTTCGGGAGATATGAGGTTGCTTGTTTTTCCCAGAATGCTCCAGAGGTGT
GGGAGGTGAGAGATTTTTTTTTTTTCCTCCCGCCCCCCCCCAGATGAAGT
GTCTGATTGTATGTAGAGTTGCCCCCATCTAGCTCACCTCCATTATGATG
ACCGGACTTCTCTTGAGGGACGTTTTGTCCTCCTGATCCATAATTGTTTC
TGTCTGAACGATTTTTGGTCTCGGTTTTGTTATAGCATCCTGACTACAAG
AATGTTCCCGCGACTGGCCTTTTGTGGGTACCCGCCTCTCGGGTATATTC
TTTTGTCCGACTCCCTTATTTTTGTTTTTGGTAGTGTTTTTCCTTTTTTT
TCTAGCTCGATTGCTCCTTTGTCTTTCCCCCCCTTCTATTGTACCGATTC
CCTTTGTCGCATTTTCTTTTCTCCTCCTTTGTTCAGTATGTTTCTGGCTC
CTTGTCTGGGCATCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_n10.b1 MSMg01no322_n10.b1 CHROMAT_FILE:
MSMg01no322_n10.b1 PHD_FILE: MSMg01no322_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:53 2005
         (573 letters)



>mm_chr5_14583824_14584795
          Length = 972

 Score =  919 bits (475), Expect = 0.0
 Identities = 484/487 (99%), Gaps = 1/487 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaatatattctcttatctataaacgttaaaagttagttaaaaatgatgttaag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattcaaaatatattttcttatctataaacgttaaaagttagttaaaaatgatgttaag 427

                                                                       
Query: 65  taattgtctttagagcactctctaaaaccatatgcctctttaaacctcagaatgcctttc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taattgtctttagag-actctctaaaaccatatgcctctttaaacctcagaatgcctttc 368

                                                                       
Query: 125 taaacatagcagtttcttagacctttaggaatgcacacattccatgattattcctccttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taaacatagcagtttcttagacctttaggaatgcacacattccatgattattcctccttt 308

                                                                       
Query: 185 tgtgaaattaattcagttctcatatagcatgattgaagatttacttctcaagctttgatg 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 tgtgaaattaattcagttctcatatagcatgattgaagatttacgtctcaagctttgatg 248

                                                                       
Query: 245 aaagatgtttgtgttttcattaatgttatttccctctggctacaaaacaaaagcaaaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaagatgtttgtgttttcattaatgttatttccctctggctacaaaacaaaagcaaaaac 188

                                                                       
Query: 305 aagaacaaggacccaagcaataaatggaaaagaacaacaacaacaacaacaacaaaaccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aagaacaaggacccaagcaataaatggaaaagaacaacaacaacaacaacaacaaaaccc 128

                                                                       
Query: 365 agaaacttacacacttttaaatctgctgttaaccagaaagtggaaattatctagagagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 agaaacttacacacttttaaatctgctgttaaccagaaagtggaaattatctagagagca 68

                                                                       
Query: 425 tatgatagctgaggtcggttctcaagttatagaacgctatacatagcattctatacatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  tatgatagctgaggtcggttctcaagttatagaacgctatacatagcattctatacatat 8

                  
Query: 485 aggaagc 491
           |||||||
Sbjct: 7   aggaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space:   541606
Effective search space used:   541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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