Query= MSMg01no322_p09.b1 MSMg01no322_p09.b1 CHROMAT_FILE:
MSMg01no322_p09.b1 PHD_FILE: MSMg01no322_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:02 2005
(292 letters)
>mm_chr5_79499798_79500492
Length = 695
Score = 520 bits (269), Expect = e-152
Identities = 288/295 (97%), Gaps = 3/295 (1%)
Strand = Plus / Minus
Query: 1 aatatgaaggtattagaaaacaaagttaggaagaccatagttgaagcaagatgaccggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 495 aatatgaaggtattagaaaacaaagttaggaagaccatagttgaagcaagatggcgggca 436
Query: 61 tgcggaaggaaaatctatgagcctagcaaccttggtactct-ggggtgttatacaatgta 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 tgcggaaggaaaatctatgagcctagcaaccttggtactctgggggtgttatacaatgta 376
Query: 120 taaggtgcaaagaactgtttgctaatacttcttcagtcatatcctctccttgtgttgcta 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 375 taaggtgcaaagaactgtttgctaatatttcttcagtcatatcctctccttgtgttgcta 316
Query: 180 tcgtctttatattcctctgttatactatatattgttttagaggcagtttcccttcacaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcgtctttatattcctctgttatactatatattgttttagaggcagtttcccttcacaat 256
Query: 240 accatttttttttt--caaatcactctctaaggatcatggtggtggcaataaaat 292
||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acctttttttttttttcaaatcactctctaaggatcatggtggtggcaataaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 695
Length adjustment: 9
Effective length of query: 283
Effective length of database: 686
Effective search space: 194138
Effective search space used: 194138
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no322_p09.g1 MSMg01no322_p09.g1 CHROMAT_FILE:
MSMg01no322_p09.g1 PHD_FILE: MSMg01no322_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:02 2005
(669 letters)
>mm_chr5_79321055_79322123
Length = 1069
Score = 1280 bits (662), Expect = 0.0
Identities = 667/669 (99%)
Strand = Plus / Plus
Query: 1 ttaaaaataagatctacaaataatcttatacagacagggcaagtgagttttatgcattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaataagatctacaaataatcttatacagacagggcaagtgagttttatgcattta 260
Query: 61 ggaatctaaatgtgtatatattcatgtattatacatatacacattttaaatttatatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaatctaaatgtgtatatattcatgtattatacatatacacattttaaatttatatata 320
Query: 121 cattaaaatatatataaaataaaagccatgaagttgaagaagagaaaagagtatatggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaaaatatatataaaataaaagccatgaagttgaagaagagaaaagagtatatggct 380
Query: 181 taagggagtatttgagtgaaggaaagagaaaggggaaaatggtatacatatattttaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagggagtatttgagtgaaggaaagagaaaggggaaaatggtatacatatattttaata 440
Query: 241 tcataaataaaataaacaagtataaaaataagctcacttaaaatggatatcttttaaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcataaataaaataaacaagtataaaaataagctcacttaaaatggatatcttttaaccc 500
Query: 301 caacaaattgcatcatgaggtccccaaaatttcttctctttatcatcatgtgtatattgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacaaattgcatcatgaggtccccaaaatttcttctctttatcatcatgtgtatattgt 560
Query: 361 gaacctcacgcatacacacaaaaacgtattgtgagtttgtacaaacagtaataattgaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacctcacgcatacacacaaaaacgtattgtgagtttgtacaaacagtaataattgaag 620
Query: 421 taataatggtaaatctattgaaaatgcagttgttagaatgagaatataaaacagaaacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taataatggtaaatctattgaaaatgcagttgttagaatgagaatataaaacagaaacta 680
Query: 481 taatgaaatattttagcaatgctatttcatatattttgaaaattatcatattatatcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatgaaatattttagcaatgctatttcatatattttgaaaattatcatattatatcatt 740
Query: 541 ctgatataggtagctggacagttctataggcaaaaatgggatacttgcggtgaaatgctt 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 ctgatataggtagctggacagttctataggcaaaaatgggatacttgtggtgaaatgctt 800
Query: 601 tctaactgaagcattgganatttaagctttcaaattttatattatatattgtcctaggta 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctaactgaagcattggaaatttaagctttcaaattttatattatatattgtcctaggta 860
Query: 661 ttactttac 669
|||||||||
Sbjct: 861 ttactttac 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
