BAC Information

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BAC

Clone NameMSMg01-323A17
Chromosome5 (Build37)
Map Location 51,164,822 - 51,165,482
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323A17.T7 (MSMg01no323_a17.b1)MSMg01-323A17.TJ (MSMg01no323_a17.g1)
ACCAG441577AG441578
length1,1651,146
length of high quality
(start - end)		736 (89 - 824)362 (91 - 452)
definitionCHROMAT_FILE: MSMg01no323_a17.b1 PHD_FILE: MSMg01no323_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:10 2005CHROMAT_FILE: MSMg01no323_a17.g1 PHD_FILE: MSMg01no323_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCGTCTTTTNNNNNCCATTGGGCGCTAAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTTTGTTTAGCTCTCCCTTATAATTTTAATGGGGTTATT
TGATTTTCTGGAGTCCCTTTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCTTATCTGACTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAG
TTTCATGAGGTCCCATTTGTCAATTCTCGATCTTAAAAAACAAGCCAGAA
CTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATACTGTGATACTA
CAATTACTCAGAAGTTCTTTTATTGTTGAGAATAGTTTTTGCTATCCTAT
GTTTTTGTTATTCCATATGAATTTGCAAATTGCTCTTCTAACTCTGTGAA
GAATTGAGTTAGGATTTTAATTAAGTACATGTTGTCATACACATATATTG
TAATCCTTCATTTAATGCTATAATGGTAAGTAATTCTTAAGTCTACCTAT
TTTTTTTTTTACAAAGTGCATTTATGGTGTGTGTATGTGTTTCTATTCTA
TTCATAACTTTGTGAAACAGAATCTTACGTTCTCAAACTGTCTTTTAACT
CATTGTTTAATTGAGGGTGGTCCCAAATTTCTGATTCTCCTGTCTATCTG
TCAGGTACTTAGATTAACCATGTCTGGTGTGTTTGGCATTTCTGTTGTTT
CTCTCATATATGTATGTATGTGGATATATATATATATATATATATATATA
TATATATGCNTATATATATGTGTGGGNNGNGNATGTTTGCATGNNCNNAA
ATGGATATGGAAACTATGNCCTATGGGGGGGGCCGCCAATTATATATTTC
TGAAACAAAATATTTTGTAGCCATTTTATTTATTGTGGTTATTAAACCCT
ATTTAAAAGGGGGTTATAATCNCCTTAATCATATTTAAAAAAATTTTTTT
TTTTTTGTTTGTGCGCCGATTAAAAATAAAGGAGTAACCATCTTTTATTG
TTTTTTGTAGGTTCAGTTTAAAAAAAAAAGGNAAATTAAATGTTTGTTTT
TTTCCCACTCCTTTTATCAAAGAACTGGGGAAATCTCATTTAAAAATTAA
GGGGATTCGTTTTTT

NNCCCACGCTTNNNNAAACGCATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGATCTAAGAATGGCAG
GTACTGATGTGGTTGGCCTGTAAATAAGCTCAGGAATGTCAAATACCAGG
ATGGAGGTTCCAGAAAAGCTAAAAATAACACTAACTTCCTGCAATATTAA
TCATGGGCATATACTCAGAGTGATCAAAGTAAAAGTCGGAATACAAAAAG
GAAGCTAAATATTCAGGTGACTATAGCAGTATTCACAATAGCCAAGTTAG
GAACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGTGTAGATAGATATGTAGGTACATAGAAGATAGATAGATAGATAGA
TTTTTTTATAGATAGATAGATAGATAGATATTATTTAAATAATAGGAAAC
ACCATGTGTAGGGAGGGCTTAGGTAAGAGANTGAATAGAAGAGAGTAGGG
ATGAGTTTGATGAAATTATATGAAATGTTTNTATGAAATTNTTATTTATA
GTANNNAAAAGTTGGAAAGAAANNAGATATNNTTTAANAGAGGAATGGAT
ANAGATTATGTGGTANATTTATAAAATGGAGTTTTAGAGAGTTATTAATA
ANAATGAATTTATGAAATTATTATTGAAATGGATGGATTTGTATTATTTT
GAATGAGGTAATTTAATTTTTAAAGAAAATAAATGGAATGTATTTATTGA
TAAGTGGATATTATTTTTTTAGGGTTGGAAAANNAAGAATAAATTTTTAA
ATTATATGAAATTTANTTATAAGGAAGAAAAAAGTGTGTAAATTTTTTTT
TTTTTTAAAAGGGAAAAAAATTATTTTTTGTTAGATTTTATAAATAAATT
TTGGTATNATAAAATTTATGAATGTAAATTNGAAAAATTATTTTTATGGG
GATTTTTTATTTATAAAATTTTANATTATTATATTTTAGTTGGTGTTAAA
AAAAAATTTTTTTAAAAATAATAATATTTTTTATTTAAATAAGTTTTTAT
ATTANTTTATAAATTAAAAATTAATTTTAAATAATTTTATTTTTTNTAAT
TATAATATTTANATTAGATAAAGTTAATTATTATTATTTAGATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_a17.b1 MSMg01no323_a17.b1 CHROMAT_FILE:
MSMg01no323_a17.b1 PHD_FILE: MSMg01no323_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:10 2005
         (736 letters)



>mm_chr5_51164603_51165734
          Length = 1132

 Score = 1048 bits (542), Expect = 0.0
 Identities = 640/688 (93%), Gaps = 31/688 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggggttatttgattttctggagtc--ccttttcttgagttctttatatatattggat 58
           |||| ||||||||||||||||||||||  ||  |||||||||                 |
Sbjct: 220 aatgaggttatttgattttctggagtccacc--ttcttgagt-----------------t 260

                                                                       
Query: 59  attagtcccttatctgacttaggataggtaaagatcctttcccaatctgttggtggcctt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagtcccttatctgacttaggataggtaaagatcctttcccaatctgttggtggcctt 320

                                                                       
Query: 119 tttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttcatgaggtcccat 178
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tttgtcttattgttggtgtcttttgccttgcagaagctttgcagtttcatgatgtcccat 380

                                                                       
Query: 179 ttgtcaattctcgatcttaaaaaacaagccagaac-tcagaccaatttctcttatgaata 237
           |||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||
Sbjct: 381 ttgtcaattctcgatcttaaagcacaagccagaacttcagaccaatttcccttatgaata 440

                                                                       
Query: 238 tcgatgcaaaaatactgtgatactacaattactcagaagttcttttattgttgagaatag 297
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgatgcaaaaatact---atactacaattactcagaagttcttttattgttgagaatag 497

                                                                       
Query: 298 tttttgctatcctatgtttttgttattccatatgaatttgcaaattgctcttctaactct 357
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttttgctatcctaggtttttgttattccatatgaatttgcaaattgctcttctaactct 557

                                                                       
Query: 358 gtgaagaattgagttagg-attttaattaagtacatgttgtcatacacatatattgtaat 416
           ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 558 gtgaagaattgagtt-ggaattttaattaagtacatgttgtcatgcacatatattgtaat 616

                                                                       
Query: 417 ccttcatttaatgctataatggtaagtaattcttaagtctacctatttttttttttacaa 476
           |||||||||||||||||||| |||||||||||| ||||||| |||    |||||||||||
Sbjct: 617 ccttcatttaatgctataatagtaagtaattctgaagtctatcta----tttttttacaa 672

                                                                       
Query: 477 agtgcatttatggtgtgtgtatgtgtttctattctattcataactttgtgaaacagaatc 536
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 673 agtgcatgtatggtgtgtgtatgtgtttctattctattcataactttgtgaaacataatc 732

                                                                       
Query: 537 ttacgttctcaaactgtcttttaactcattgtttaattgagggtggtcccaaatttctga 596
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 733 ttacgttctcaaactgtcttttaactcattgtttaattgagggttgtcccaaatttctga 792

                                                                       
Query: 597 ttctcctgtctatctgtcaggtacttagattaaccatgtctggtgtgtttggcatttctg 656
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 793 ttctcctgtctatctgtcaggtacttagattaaccatgtctggtgtgttcggcatttctg 852

                                       
Query: 657 ttgtttctctcatatatgtatgtatgtg 684
           ||||||||||||||||| ||||| ||||
Sbjct: 853 ttgtttctctcatatatatatgtgtgtg 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1132
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1122
Effective search space:   814572
Effective search space used:   814572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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