Query= MSMg01no323_e13.b1 MSMg01no323_e13.b1 CHROMAT_FILE:
MSMg01no323_e13.b1 PHD_FILE: MSMg01no323_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:39 2005
(461 letters)
>mm_chr5_140467308_140468168
Length = 861
Score = 455 bits (235), Expect = e-132
Identities = 306/355 (86%), Gaps = 44/355 (12%)
Strand = Plus / Minus
Query: 1 acagcaaatcagctaaccccaactccaacaggggaggcagaaaagaactaaccagacgaa 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acagcaaatcagttaaccccaactccaacaggggaggcagaaaagaactaaccagacgaa 268
Query: 61 cagtcagcaaaaacacagcaaacagcaaacctctctcaatactgatcttaaatgcaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagtcagcaaaaacacagcaaacagcaaacctctctcaatactgatcttaaatgcaaatg 208
Query: 121 acctcaagtgtgtgtgtgtgtgtgtgtgtgtgtgt---cccgcttaagagatgtaaacta 177
||||||| | | ||| ||||||||||||||||||
Sbjct: 207 acctcaa-------------------------t-tccccccacttaagagatgtaaacta 174
Query: 178 gcgggacatagtggcacatgcctttaatcccagcacttg-------------ggaggatt 224
||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 173 gcgggacatggtggcacatgcctttaatcccagcacttgggaggcagaggcaggaggatt 114
Query: 225 tctgagtttaaggccagcctggtctacaaagtgagttccaaggctacacagagaaaccct 284
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tctgagtttgaggccagcctggtctacaaagtgagttccaaggctacacagagaaaccct 54
Query: 285 gtctagaaaaacaaaaacaaacaaacaaacaaacaaacaacaacaacaacaacaa 339
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 53 gtcttgaaaaacaaaaacaaacaaacaaa-aaac-aacaacaacaacaacaacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_e13.g1 MSMg01no323_e13.g1 CHROMAT_FILE:
MSMg01no323_e13.g1 PHD_FILE: MSMg01no323_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:39 2005
(690 letters)
>mm_chr5_140311185_140312274
Length = 1090
Score = 1234 bits (638), Expect = 0.0
Identities = 678/698 (97%), Gaps = 14/698 (2%)
Strand = Plus / Plus
Query: 1 agctcaagtatgccttgagcttgcaatcctcctgcctcag-ctccc--ggagaagctgag 57
|||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct: 193 agctcaagtatgccttgagcttgcaatcctcctgcctcagtttcccaagg---agctgag 249
Query: 58 attccaggcctgggacagcaggtccagctgcaaaactgatttttttttctttccggagca 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 250 attccaggcctgggacagcaggtccagctgcaaaactgatttttttttctttccagagca 309
Query: 118 aagcagtgttgtgaagtgagatagtatgatgtgactcttcaaattggcccatgtgtgtcc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagcagtgttgtgaagtgagatagtatgatgtgactcttcaaattggcccatgtgtgtcc 369
Query: 178 ctaggct--------ggtgcatgtgacagtggtggaggctcagcacagggcttcctggtc 229
||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 370 ctaggctggtgcagaggtgcatgtggcagtggtggaggctcagcacagggctttctggtc 429
Query: 230 acgaaacagaaccccaggggttatgtggaagaaggactcacaacagggatttctgtcttt 289
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 430 acgaaacagaaccccaggggttatatggaagaaggactcacaaaagggatttctgtcttt 489
Query: 290 gtatgtttggaaggttttccccacatttgaatatctacagttttgcaaagagtcaggaag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gtatgtttggaaggttttccccacatttgaatatctacagttttgcaaagagtcaggaag 549
Query: 350 gctttcccacatcccagtgttgacagcgttgcaagttagcatagcgccaaatgctcaacc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gctttcccacatcccagtgttgacagcgttgcaagttagcatagcgccaaatgctcaacc 609
Query: 410 atgagacagctgctgctaaaccctgcctgtgcaaaacaagcacggtgctgaaggcaagcc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atgagacagctgctgctaaaccctgcctgtgcaaaacaagcacggtgctgaaggcaagcc 669
Query: 470 agtggtgctgagagctaacaagggtgcaggtcaactggaacacctactattgttggcagg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agtggtgctgagagctaacaagggtgcaggtcaactggaacacctactattgttggcagg 729
Query: 530 catgtgaagaagtactggcgtgctggaaagcagttgggtaaccagtctcgctttgttttc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catgtgaagaagtactggcgtgctggaaagcagttgggtaaccagtctcgctttgttttc 789
Query: 590 agtgctgggaatagaactcagagcctcacagatgggaggcgaatgctctaccactgagct 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 agtgctgggaatagaactcagagcctcacagatgggaggcgaatgctctaccactgagct 849
Query: 650 acaccttcaatcctgcttcggtggtttattttgtcagt 687
||||||||||||||||||||||||||||||||||||||
Sbjct: 850 acaccttcaatcctgcttcggtggtttattttgtcagt 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
