Query= MSMg01no323_h24.b1 MSMg01no323_h24.b1 CHROMAT_FILE:
MSMg01no323_h24.b1 PHD_FILE: MSMg01no323_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:07 2005
(652 letters)
>mm_chr5_56426310_56427362
Length = 1053
Score = 1050 bits (543), Expect = 0.0
Identities = 625/653 (95%), Gaps = 3/653 (0%)
Strand = Plus / Plus
Query: 1 ttaattaccagactgatgctgcttcgtgctttccactatggcacgtgctttcttccttgt 60
|||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 201 ttaattaccaaactgatgctgcttcgtgctttccattatggcacatgctttcttccttgt 260
Query: 61 ggatccttctgatccaagactaacaagataaactgtcccatgagagcaagcttcatccag 120
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ggatccttctgatccgagactaacaagataaactgtcccatgacagcaagcttcatccag 320
Query: 121 agcacctcctgctggagcacattcaaattcctgaaattacttctcacatattttgagcat 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agcacctcctgctggagcacattcaaacacctgaaattacttctcacatattttgagcat 380
Query: 181 gtgttttagttcttacagcactat-aataaattcacggacttaatatattctgaaggttg 239
|||||||| ||||||||||||||| || |||||||||| ||||| |||||||||||||||
Sbjct: 381 gtgttttatttcttacagcactataaaaaaattcacgggcttaacatattctgaaggttg 440
Query: 240 ttgtttctaaccaattttatattgttttcttcatgcttgaaagtttcttcttatttattt 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ttgtttctaaccaattttatattgttttcttcatgcttgaaagttacttcttatttattt 500
Query: 300 ttccttaggtgtaatttctttttattttattggatattttctttatttacatttcaaatg 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttccttaggtgtaatttctttttattttattggatattttctttatctacatttcaaatg 560
Query: 360 ttatctcctatcctattcccccaccccctgcttctataatttgtgccttagttacttttc 419
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatcgcctatcctatttccccaccccctgcttctataatttgtgccttagttacttttc 620
Query: 420 tgttgatgtgacaaagtacaacaaccaaagaagtgtttaaaagacaaatatttcatttga 479
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 621 tgttgatgtgacaaagtacaacaaccaaagaaatgtttaaaagacagatatttcatttga 680
Query: 480 cgctcacagtcgcagaggattaaagtccatgactattacagcagagagcatattagcagg 539
| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 cactca--gtcgcagaggattaaagtccatgactattacagcagagagcataatagcagg 738
Query: 540 caggcatggtactggagcaatggctgagaacttacatctttatcttcaagtagaaggcag 599
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 739 caggcatggtactggattaatagctgagaacgtacatctttatcttcaagtagaaggcag 798
Query: 600 gaaagagaaacaaagggacaggaagagggaaagggagtgagaaaggagaggga 652
|||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 799 gaaagagaaacagagggacaggaagagggaaagggagtgaggaaggagaggga 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_h24.g1 MSMg01no323_h24.g1 CHROMAT_FILE:
MSMg01no323_h24.g1 PHD_FILE: MSMg01no323_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:07 2005
(772 letters)
>mm_chr5_56604263_56605435
Length = 1173
Score = 731 bits (378), Expect = 0.0
Identities = 397/404 (98%), Gaps = 3/404 (0%)
Strand = Plus / Minus
Query: 372 gcacagaggaaaaattcctgaatagaacagcaatggcttgtgctgtaagatcaagaatca 431
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1173 gcacagaggaaaaattcctgaatagaacagcaatggcttgtgctataagatcaagaatca 1114
Query: 432 acaaatgtgacctcataaaactgcaaagcttctgtaaggcaaaacacaccgtcaataaga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 acaaatgtgacctcataaaactgcaaagcttctgtaaggcaaaacacaccgtcaataaga 1054
Query: 492 caaaaaggctaccaacagattggaaaaggatctttacctatcctaaatcagataggggac 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 caaaaaggctaccaacagattggaaaaggatctttacctatcctaaatcagataggggac 994
Query: 552 taatatccaatatatatat--attttctaagttttatcagaaaagacatattatacaaat 609
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 993 taatatccaatatatatatgtattttctaagttttaacagaaaagacatattatacaaat 934
Query: 610 gaatagtactctcctaggctaaggaaaatcatactgacagaagcagcaattaagataaca 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 aaatagtactctcctaggctaaggaaaatcatactgacagaagcagcaattaagataaca 874
Query: 670 gaaagaccactattttatactttggatagtgtaattcaagtaacatagcagaattaggac 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaaagaccactattttatactttggatagtgtaattcaagtaacatagcagaattaggac 814
Query: 730 tgctattttaa-caaaatatgtttattttcattaccatgatgaa 772
||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 813 tgctattttaaacaaaatatgtttattttcattacaatgatgaa 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1173
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1163
Effective search space: 886206
Effective search space used: 886206
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
