Query= MSMg01no323_l24.b1 MSMg01no323_l24.b1 CHROMAT_FILE:
MSMg01no323_l24.b1 PHD_FILE: MSMg01no323_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:39 2005
(749 letters)
>mm_chr5_58848494_58849642
Length = 1149
Score = 1433 bits (741), Expect = 0.0
Identities = 747/749 (99%)
Strand = Plus / Minus
Query: 1 gacattttgacaaaaaagaatcatctacattatatctatgggtggggggagacttaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 gacattttgacaaaaaagaatcatctacattatatctatgggtggggggagacttaattg 890
Query: 61 cttttagtatttccagcccagaatccagatgaaaggttttaaagtcataaacataaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 cttttagtatttccagcccagaatccagatgaaaggttttaaagtcataaacataaagag 830
Query: 121 aatatttctgtgacattttgagtatccatatttagaatgctaattacaatcagcacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aatatttctgtgacattttgagtatccatatttagaatgctaattacaatcagcacacac 770
Query: 181 attgcagtgtttcctcaagagagtaatgcatttccctcttgaccctgttcccctaggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 attgcagtgtttcctcaagagagtaatgcatttccctcttgaccctgttcccctaggatg 710
Query: 241 tcctcatgtggaagtcatatttcaatgacaaaggcagtatgcagggatgcctgttgatag 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 709 tcctcatgtggaagtcatatttcaatgacaaaggcagtaagcagggatgcctgttgatag 650
Query: 301 acttgaagagcttcctgtgaatgccagttatccatggagtgcttttggatgcctgagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acttgaagagcttcctgtgaatgccagttatccatggagtgcttttggatgcctgagtca 590
Query: 361 gacatttcttataagatgctccctttatgaagatgtggctctaataattaaataatccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gacatttcttataagatgctccctttatgaagatgtggctctaataattaaataatccca 530
Query: 421 gttgccacataaagtatgaaggaaaagatggagacataacatataagaaagaaaagggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gttgccacataaagtatgaaggaaaagatggagacataacatataagaaagaaaagggat 470
Query: 481 aactataacataaagtattaagaataaaagagcagagatttagatcatggtgaagggact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aactataacataaagtattaagaataaaagagcagagatttagatcatggtgaagggact 410
Query: 541 tgggaatgtacaaaaacttactgacaattattaaagaaatatataagataacagaaggag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgggaatgtacaaaaacttactgacaattattaaagaaatatataagataacagaaggag 350
Query: 601 gaggaaaattgaattgtggggataaattaaaatttctgtttgcatgaaagcttcaaggaa 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaggaaaattgaattgtgaggataaattaaaatttctgtttgcatgaaagcttcaaggaa 290
Query: 661 actattctgcaggttgtttttcaagtagaaacaattgaattgatacaccttgatacattg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 actattctgcaggttgtttttcaagtagaaacaattgaattgatacaccttgatacattg 230
Query: 721 acattttagaaatgtatatataacagtga 749
|||||||||||||||||||||||||||||
Sbjct: 229 acattttagaaatgtatatataacagtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space: 841721
Effective search space used: 841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no323_l24.g1 MSMg01no323_l24.g1 CHROMAT_FILE:
MSMg01no323_l24.g1 PHD_FILE: MSMg01no323_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:40 2005
(689 letters)
>mm_chr5_58679071_58680160
Length = 1090
Score = 1290 bits (667), Expect = 0.0
Identities = 685/691 (99%), Gaps = 3/691 (0%)
Strand = Plus / Plus
Query: 1 ctttccacaggatcaaaatcatctagcaagagctgcaatgcccaaatgaagatgctccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttccacaggatcaaaatcatctagcaagagctgcaatgcccaaatgaagatgctccag 260
Query: 61 tcactggaaggacaatgtttcagacattaatcaccccaggtttctttctgccatccaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactggaaggacaatgtttcagacattaatcaccccaggtttctttctgccatccaatt 320
Query: 121 caagtcttcagtttccaaggtagtgaactgttcaggaaagtcttgcagacctcaaagtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtcttcagtttccaaggtagtgaactgttcaggaaagtcttgcagacctcaaagtac 380
Query: 181 tcgatggaagttcccagtagaacaccaacctaaaatgctctactgatccttacattctgt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tcgatggaagttcccagtagaacaccaatctaaaatgctctactgatccttacattctgt 440
Query: 241 tcacttgaaatagctacattgtgctgaatttatgggatcaagaatgtctaatgcaatcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacttgaaatagctacattgtgctgaatttatgggatcaagaatgtctaatgcaatcag 500
Query: 301 ttcacatggggagcactgagccaatacacgtgaaatcagatacttcacttaatcaccagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcacatggggagcactgagccaatacacgtgaaatcagatacttcacttaatcaccagc 560
Query: 361 agctgacttgtggtctggatatgcttcaacagccagtcctttctgtcataatttctgagg 420
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 agctgactcgtggtctggatatgcttgaacagccagtcctttctgtcataatttctgagg 620
Query: 421 gctcatccttacagtgaaggtttcagatagcatcctgtaggactcctgcttggttgggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcatccttacagtgaaggtttcagatagcatcctgtaggactcctgcttggttgggga 680
Query: 481 ttgctttgtctttagcctttctttcttaattttctttttttt-aaagaaaataatctact 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 ttgctttgtctttagcctttctttcttaattttctttttttttaaagaaaataatctact 740
Query: 540 gtactttctatgtgtatgaatacatttatgcctctgtaccatttatgtatattgcttcag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtactttctatgtgtatgaatacatttatgcctctgtaccatttatgtatattgcttcag 800
Query: 600 gaagata-anagagggtgcctggtcccctggagctggaattacagacaattgttagctgc 658
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaagataga-agagggtgcctggtcccctggagctggaattacagacaattgttagctgc 859
Query: 659 catgtgagtactgggaattgaacttcccgtt 689
|||||||||||||||||||||||||||||||
Sbjct: 860 catgtgagtactgggaattgaacttcccgtt 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space: 733320
Effective search space used: 733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
