BAC Information

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BAC

Clone NameMSMg01-323M03
Chromosome5 (Build37)
Map Location 24,748,023 - 24,748,471
singlet/doubletsinglet
Overlap geneGalnt11
Upstream geneLOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik
Downstream geneMll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323M03.T7 (MSMg01no323_m03.b1)MSMg01-323M03.TJ (MSMg01no323_m03.g1)
ACCAG442090AG442091
length1,1611,173
length of high quality
(start - end)		689 (88 - 776)742 (89 - 830)
definitionCHROMAT_FILE: MSMg01no323_m03.b1 PHD_FILE: MSMg01no323_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:40 2005CHROMAT_FILE: MSMg01no323_m03.g1 PHD_FILE: MSMg01no323_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGGTCTTGTGNNNNCCAGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCCTGATTTCTCTAATACTTTTAGATGAAGGGGTGTCTT
ATTTTGTCAAATGCTTCTTTTGCATCTAAGGAGATGATCATGTGATTTTT
GTCTTTGAGTTTGTTTATATAGTAGATTATATTAGTGGATTTTCATATAT
AAACCAGTGTTGCATCCCTGGAATGAAGCCTGCTTCATCGTGATGAATGA
TGGTTTTGATGTGTTCTTCTATTCAGTTTTCAAGAAGTTCATTTAGTTTT
TATTTTTGTGTTGATATTCATAAGCAATATTAGTCTGAACTTCTCTTTTT
TGGTTGTGTCTTGCATTGATATTCATAAGCGATATTGGTTTGAACTTCCT
TTTTTGGTTGTGTCTTTGTGTGGTTTAGGTATTAGAGTAATTGTGGATTC
ATAGAATGAACTAGGTAGTGTTCTTTCTGTTTCTATTTTATGGAATAGTT
TGATGAATATTGGCATTAGAACTTCTTTGAAGGTCTGGTAGAAATCTGCA
CAAAATCTGTCTGGCCTTGGGCCTTTTTTGGTTGGGAGGTTTTTATTGAC
TTCTTCTATTTCCTTATGGAGTATGGGCCTATTGAGATAGTTTACCTGCT
TGTGATATAACTTTGGTACGTGGTATCTGTCTAGAAAACCATCTATTTCA
TCTAGATTTTCCAGTTTTGTCGAGTATAGGCTTTTGTAGTAGGATCTGCA
GATTTTTTGAGTTTCCTCCATTTCTGTTGATTTGTTTCCCTTTTCATTTC
TTTCTTTGTGAATTTGGATACTGTCTCTGAGACCTTTANTTTGTTTGGCT
AGGGGTTTATCTTGTTGATTCTCTGAAAGAACAACCTTTTGGTTTGGTGA
ATCCTTGAAATGGCCCTTGTTTCTAATTTGGGGATTTCCGATCCCAAAAC
AGGGGAAATTTTTTCCCCTCGGGTATTTTCCAGGTTCTTTCTTCAAAAAA
TGAATTTTTTTTAAAAAACTTTCCTTTGTTCTGTTGGGCCCCCCAAATTT
TAATTATTTTGGGAAATAAACTTAAAAAGGGGGAGTCCCCAATTCTTTTT
CCCCTGTTATTGTTGGGTACCAAAGGTACAGGATTTTTAGCAATTTAATT
CACCCCTTCCT

NCCCCCGTCTTTTTNNNCAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTAGAATTTGGGTCA
GTTAGACGACATTGTATCTTCATTCTGGTACAAGGAGAGAACAGATTCCT
CCAAGTTGTCCTCTGATCGCTCTCTCTCTCTTTCTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCT
GTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGT
GAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTCGGAAGAGCA
GTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTCTCTTTCTTC
TTTCTGTCTCTTTTTCTTTTTTCCTCTGATATGCATGCCATGCCATGTCA
TGTCATGTCATGTCATGTGAGAGTACATACACCATACACATTAATGTTGT
AGGATTAACTTATTTTTGCTAAAAAGAAAGAACAAAAGAAAGCTGAATTA
TTGATCTCTAAATAAACTTTCAACCTGAAAAATTATGGAGAAAAACTGCC
CTTTAAAGCAATGCAGTGGTATGTTTTTAAAATTATAAACAGATGTGTAT
AAGTACTGCCCTATAGCTGACACTTGTGTCCTATGCACAAGGGCCATTTG
GTGTTATTTTTAATTGTTCTCCATCTTAATTTTGGAGACATAGTCCTCAC
TGAACCTGGAGCGCTCTGATTGATTGGGCTGGGCACCAGCGAGTTCCAGG
GATCTGTCTGCCTTTCTCTGCTTTACCTAGCTGCAATTGTGTAGGACCAC
ACCCTGCACAGTGACCAGGATCCAAACTGTGTCTGCATGGCTTCTCACAG
GACACTGACTGTGGCCGCATGCCTTTCTCACTGGAAACTGAATGTGTCCG
CATGGCTTTCTCTGGGACCATGATTTTTTTTTACCCCAACGGCTCTGGTT
GAATTCTATTGGGGGGGAGAATTTCCTTTTGACGAAATCTAAAGGCCCTT
CACTTTTTTGGGGAAAAAGGTTTTTAAAATATTCCCCCAAGCAATATTTG
TTTCCTAAGGCCCCACTCAAATTTGGTTTTGAAAAAAAAAGAAAACCTGT
TTTGGGGTTTTTTTTTTTTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_m03.g1 MSMg01no323_m03.g1 CHROMAT_FILE:
MSMg01no323_m03.g1 PHD_FILE: MSMg01no323_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:41 2005
         (742 letters)



>mm_chr5_24747530_24748671
          Length = 1142

 Score =  826 bits (427), Expect = 0.0
 Identities = 441/449 (98%), Gaps = 7/449 (1%)
 Strand = Plus / Plus

                                                                       
Query: 301 ctctctttcttctttctgtctct--ttttcttttttcctctgatatgcatgccatgccat 358
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 494 ctctctttcttctttctgtctctctttttcttttttcctctgatatgcatgccatgccat 553

                                                                       
Query: 359 g-----tcatgtcatgtcatgtcatgtgagagtacatacaccatacacattaatgttgta 413
           |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gccatgtcatgtcatgtcatgtcatgtgagagtacatacaccatacacattaatgttgta 613

                                                                       
Query: 414 ggattaacttatttttgctaaaaagaaagaacaaaagaaagctgaattattgatctctaa 473
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 614 ggattaacttatttttgctaaaaagaaagaacaaaaaaaagctgaattattgatctctaa 673

                                                                       
Query: 474 ataaactttcaacctgaaaaattatggagaaaaactgccctttaaagcaatgcagtggta 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ataaactttcaacctgaaaaattatggagaaaaactgccctttaaagcaatgcagtggta 733

                                                                       
Query: 534 tgtttttaaaattataaacagatgtgtataagtactgccctatagctgacacttgtgtcc 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgtttttaaaattataaacagatgtgtataagtactgccctatagctgacacttgtgtcc 793

                                                                       
Query: 594 tatgcacaagggccatttggtgttatttttaattgttctccatcttaattttggagacat 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatgcacaagggccatttggtgttatttttaattgttctccatcttaattttggagacat 853

                                                                       
Query: 654 agtcctcactgaacctggagcgctctgattgattgggctgggcaccagcgagttccaggg 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 agtcctcactgaacctggagcgctctgattgattgggctgggcaccagcgagttccaggg 913

                                        
Query: 714 atctgtctgcctttctctgctttacctag 742
           |||||||||||||||||||||||||||||
Sbjct: 914 atctgtctgcctttctctgctttacctag 942


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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