BAC Information

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BAC

Clone NameMSMg01-323M13
Chromosome5 (Build37)
Map Location 82,929,226 - 83,115,840
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323M13.T7 (MSMg01no323_m13.b1)MSMg01-323M13.TJ (MSMg01no323_m13.g1)
ACCAG442109AG442110
length1,1931,177
length of high quality
(start - end)		670 (136 - 805)578 (124 - 701)
definitionCHROMAT_FILE: MSMg01no323_m13.b1 PHD_FILE: MSMg01no323_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:44 2005CHROMAT_FILE: MSMg01no323_m13.g1 PHD_FILE: MSMg01no323_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,115,171 - 83,115,840)(82,929,226 - 82,929,803)
sequence
NCCCTCTCAATTNNNNNCCCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTGCTCTAAGAATCACCTTTAAAGTCTTACTAGTT
TCTTTAGTTGCTTCATGAGCCTTCAGAAGCTACACATATAGTCTCACATT
TTAAGCTTCATTTTATTCTTGATTATGTGCTCCTGTATGCAGGCATAGGT
ATATATCTATCTATCTGTGTATAGGTATGTGCACATGATTCAAGTGGAGG
TTAGAGTTGTTGGGTCCCTAGGAAGTAGGGCTAGAATGAGCCCTGTCTTC
CTGATATGACAATTTTGAGTTGATCCCAAGTTCTTTGTGAGAATAGTGAG
CATTCTTAGCTAAGCTTCCATTTATGCCCCTAATGTTCTTTATTGGTGCA
TCTAAATTTTAATCAATGAATACTAATATGGATCTTTATACAGGCACAAA
CATGCAGAAAATGCTAGAATATTATAAGCAGAGTTAACTTGCTTTAATTC
AGAATCTGTCAAAATAATACTCTTCTTCACTTAAATCACCGAAAATCTTC
CCCCCTGAAAAAGCACTGAAAGGGTTCTAAAGGGTTATTTTATAGTCAGT
TGCTTTTAATCAAACTATTTTCAGTATAATTGTATAAATAAAGTAAGTAC
GTGGTGTTTTGAGACAGAATAGGGTAGACTTCTCTCAAAAGGATAGTGGT
ACTTACGTTGGGCTCCTCGTTACACTTGTCTACCACTCTATCCATTCTCA
AGCTTTAAATATAAATGCTAAGGTTTCAAATCATTCTTACAAGATGAATT
TGGCCTGAGACCTTTTCATCACACATATTATTAGTACCCAGTCTGAACAA
CATCCTATAAAGCATTTTATATTTATGGCATTGGGCTTAATGTACACTTA
TGACCCAAAAGACTGGATAATACTTAAATGCTTCTTTTTTCTCAAAGGCA
AAATTTTTAAGGGAGGGAAGGTCCTCCTTTTTTCAAAATTTAAATTGGGT
TTTCTCTGGATTGGATTAAAAACGGGGATCCCCAGGGGAATTCATTTTTT
ATGAAAAAAAAACCCATGGGCCCTTTCTGAAGGTGGTTGAAGGGATTTCT
CAAACCAAACAATATAACTTTTGTTTTTCAGGGGGTGGGGGGAGGGAAAT
TTATTTTNTTTTTTCNNTTTCTTTNCCCNNNACTTCTTCCCTT

NCCCGCCTTCTTTNNNCCCGAAGTGAGGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAAGATGTAGAGCAAAA
TGACTGATGGTCACCTAACCTGCTGAATTTCTATGCATTGAAATGACTGT
TCTCGATGTGATAGGGAAAGGAAGAGAGGAATTAATCACTTTTATTAATA
TACTATTCAAAAAGTGCACTTTCTTCTCATTTTGGAGACTAACATATCAT
GTCTGACACATTTATTTTTGTCCTTCACAGTGAGTTACGTTTCATCTTTT
GGGTTATTGGCACAAAGAAACAGAGATCGTCTTGCAGAGGTCCGTTAATA
GTTCCATATATCACTTTAGCAGTGACTCGTCTTCTCTCCTGCAAAGTTCA
AGTTCTTACTCTTCCATATTTTTCATACATTTTTAGCATAATTCAGAGAA
CCTATTGCCTATTTTTCCACCACAGATGATGGCTTGGAAATATCGTTCCT
CTTATGAACTGGTATCAGTATTTTTGGCATTTTGTAAGGATGCTAGGCAT
TTGAGTTCTAAGTATAAGCTCTAGTAATAAAGTAACAGTGATCTTTATTA
AGTCATGTTACCTTTAAATGTGCCTTGCTTTTATATAAACCACTAAATGA
TATTATATACAATACCACTAAATGGCTTTTAATACTTGCTAAAATATGTG
TGTATTAGAAATGATCACTTGTAAGGGATCATGATTAGATGTATCATAAA
CTTAAATTAAAATTAAATTAAGTTAAATTTAAAAAAGTAGAATTTGATTT
TGCTAACAAGTAGCCATTAAGTGATAAGTTAGTAGGCNGAGGAATAGAGA
AACGAATAGCTTGTATACTGTTATCACTACATGTCTCTTCTTGTCAGCAT
TGATGCTGTCATTTAAGTTCAAAAACTGCTCTAGGCCCAAAAAATTTTAT
AATGAATTTGTCCCCCGATTCAGGTAAAAACCCCCCTCACAAACTTGAGG
GGGAAAAAAGGGAGAAGGAGGCCTTTCCAAAAAAAAAAATTTTTTCAGGG
CGGGCCAACTTGTGCAAAACAAAAAAAAAAATGGGTAAAAACGAGAAAAA
ACCCCCCTTCTGTTCCGCGGAATTGTTTTGGGAAAAAAAAAAGGGCTTCC
ACTTTCCTTTTTTTGGGAAAAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_m13.b1 MSMg01no323_m13.b1 CHROMAT_FILE:
MSMg01no323_m13.b1 PHD_FILE: MSMg01no323_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:44 2005
         (670 letters)



>mm_chr5_83114971_83116040
          Length = 1070

 Score = 1195 bits (618), Expect = 0.0
 Identities = 657/670 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatagtctcacattttaagcttcattttattcttgattatgtgctcctgtatgcaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 atatagtctcacattttaagcttcattttattcttgattatgtgctcctgtatgcaggca 811

                                                                       
Query: 61  taggtatatatctatctatctgtgtataggtatgtgcacatgattcaagtggaggttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 taggtatatatctatctatctgtgtataggtatgtgcacatgattcaagtggaggttaga 751

                                                                       
Query: 121 gttgttgggtccctaggaagtagggctagaatgagccctgtcttcctgatatgacaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gttgttgggtccctaggaagtagggctagaatgagccctgtcttcctgatatgacaattt 691

                                                                       
Query: 181 tgagttgatcccaagttctttgtgagaatagtgagcattcttagctaagcttccatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgagttgatcccaagttctttgtgagaatagtgagcattcttagctaagcttccatttat 631

                                                                       
Query: 241 gcccctaatgttctttattggtgcatctaaattttaatcaatgaatactaatatggatct 300
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 630 gcccctaatattctttattggtgcatctaaattttaatcaatgaatgctaatatggatct 571

                                                                       
Query: 301 ttatacaggcacaaacatgcagaaaatgctagaatattataagcagagttaacttgcttt 360
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 570 ttatacaggcacaaacatgctgaaaatgctagaatattataagcagagttaatttgcttt 511

                                                                       
Query: 361 aattcagaatctgtcaaaataatactcttcttcacttaaatcaccgaaaatcttcccccc 420
           |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 510 aattcagaatttgtcaaaataatacttttcttcacttaaatcaccaaaaatcttcccccc 451

                                                                       
Query: 421 tgaaaaagcactgaaagggttctaaagggttattttatagtcagttgcttttaatcaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgaaaaagcactgaaagggttctaaagggttattttatagtcagttgcttttaatcaaac 391

                                                                       
Query: 481 tattttcagtataattgtataaataaagtaagtacgtggtgttttgagacagaatagggt 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 390 tattttcagtataattgtataaataaagtaagtacatggtgttttgagacagaatagggt 331

                                                                       
Query: 541 agacttctctcaaaaggatagtggtacttacgttgggctcctcgttacacttgtctacca 600
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 330 agacttctctcaaaaggatagtggtacttacgttgtgctcctcgttacacttgtctacca 271

                                                                       
Query: 601 ctctatccattctcaagctttaaatataaatgctaaggtttcaaatcattcttacaagat 660
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||
Sbjct: 270 ctctatccattctcaagctttaaatataaatgctaaggtttcaagtcattcttactcgat 211

                     
Query: 661 gaatttggcc 670
           ||| ||||||
Sbjct: 210 gaacttggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no323_m13.g1 MSMg01no323_m13.g1 CHROMAT_FILE:
MSMg01no323_m13.g1 PHD_FILE: MSMg01no323_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:44 2005
         (578 letters)



>mm_chr5_82929026_82930003
          Length = 978

 Score = 1056 bits (546), Expect = 0.0
 Identities = 570/578 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatttctatgcattgaaatgactgttctcgatgtgatagggaaaggaagagaggaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatttctatgcattgaaatgactgttctcgatgtgatagggaaaggaagagaggaatt 260

                                                                       
Query: 61  aatcacttttattaatatactattcaaaaagtgcactttcttctcattttggagactaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcacttttattaatatactattcaaaaagtgcactttcttctcattttggagactaac 320

                                                                       
Query: 121 atatcatgtctgacacatttatttttgtccttcacagtgagttacgtttcatcttttggg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 atatcatgtctgacacatttatttttgtccttcacaatgagttacgtttcatcttttggg 380

                                                                       
Query: 181 ttattggcacaaagaaacagagatcgtcttgcagaggtccgttaatagttccatatatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattggcacaaagaaacagagatcgtcttgcagaggtccgttaatagttccatatatca 440

                                                                       
Query: 241 ctttagcagtgactcgtcttctctcctgcaaagttcaagttcttactcttccatattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttagcagtgactcgtcttctctcctgcaaagttcaagttcttactcttccatattttt 500

                                                                       
Query: 301 catacatttttagcataattcagagaacctattgcctatttttccaccacagatgatggc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 catacatttttagcataattcagagaagctattgcctatttttccaccacagatgatggc 560

                                                                       
Query: 361 ttggaaatatcgttcctcttatgaactggtatcagtatttttggcattttgtaaggatgc 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggaaatatcattcctcttatgaactggtatcagtatttttggcattttgtaaggatgc 620

                                                                       
Query: 421 taggcatttgagttctaagtataagctctagtaataaagtaacagtgatctttattaagt 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 taggcatttgagttctaagtataagatctagtaataaagtaacagtgatctttattaagt 680

                                                                       
Query: 481 catgttacctttaaatgtgccttgcttttatataaaccactaaatgatattatatacaat 540
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 681 catgttacctttaaatgtgccttgcttttatataaacaactaaatgatattatatataat 740

                                                 
Query: 541 accactaaatggcttttaatacttgctaaaatatgtgt 578
           |||||||||||||||||||||| | |||||||||||||
Sbjct: 741 accactaaatggcttttaatacctactaaaatatgtgt 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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