BAC Information

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BAC

Clone NameMSMg01-324I16
Chromosome5 (Build37)
Map Location 60,093,966 - 60,094,266
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324I16.T7 (MSMg01no324_i16.b1)MSMg01-324I16.TJ (MSMg01no324_i16.g1)
ACCAG442664AG442665
length753969
length of high quality
(start - end)
306 (37 - 342)---
definitionCHROMAT_FILE: MSMg01no324_i16.b1 PHD_FILE: MSMg01no324_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:53 2005CHROMAT_FILE: MSMg01no324_i16.g1 PHD_FILE: MSMg01no324_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
ATATACGAAAGTGCCTAAACTGAAAATACATTAACAGGGAATTCCTGATC
AAAACTATCAAACAAACACAAACAAACAAACAAACAAACAAAACAAAACA
GGTAATAACATAAGGAAGTGATCTCCCCAGGTCACTATTCTAGTTACTTT
TGTAACTTGAAACAAACAACAAACTAGAGGCATATATGAAGGGAGAGTAT
TAAGAAGTTGAGTCTAGTACAGGGGAATGCCAGGGTCAGGAAGTGGGAGT
GGGTGGGTTGGGGATCAGAGCAGGGGGAGGGTATAGGGGACTTTCCNGTT
NNTGTTTGGGTTGTNTNNTTTTTTTTTCTTTCTTTGNTNTNGGNTGGTNC
CTGGTCCCACTTGTTCNGTTTTTTGGTCTTATTTGTGGATTCTATCCCAC
AGGAGTAAACAGAGAGATATTTGGAGATGCTATTGTCTAGAACATGTTAT
ACACGAATAACAGACATATAGTACGTTTCAATACTTGTTTATCACGCTTG
CCAAAAATTGTGACCGGCTTGGAACTAGTTAATGAAACTCTGTCTCACAT
CAGGTACACCTTGTCGCCACCAGGACTTACGAACCAAAAAGCTGAGAGTA
TGGCCTGACACTACATTTGCCCATATGGTTAGAAATGAGGGCCTCTCTCC
AAGAAGTGCGACTTTTTATCGGCCTCGTTAATCATGCTCTTTTAACACCT
GTG
GCCGCAGGCCGGGCGACCTNCGGCGCGCCGACGACCCACAACCCCCGCGG
AACGGGGAGGCCGAAGGCCGACCAAGGGGGGAGCCCCGGGGGGACCTCCA
GGCAGCGCGGGGCGCCGGGGGCGCCGGGGCAGAGGCGGACGCCCCCACAT
TACCCTCCGATGGACCCGCGCCGCTGGAGTGCCCCCGCCCCGCCGCACAA
CAACACGCAAAATAGGCGCCCGACCGCAGCATATGGACAGAAAAATAAAA
CGGAGGCGGATCGAAATAGGACGAAGGGGGGGGGGGCGGGGGGGGGGGGG
GGGGGGGGGGCGGCGGCGCGTGCGGGGGGGGGCGCCAAACCCGGGGGCGA
GAGAGGGAGACGGGCGCCCAGCGCCCAGAAAGCGAAAACCAACGGGGGGG
GAGGGACGCCCTAGCCCGAGCCTTTTCTTTCGCGCCAAAAGGTGCCAAAA
AGACTGCGGGGGNTTAGAGAGGGGCCCCCCTTGTAGGGTCGGAGGGGACC
CCGCCCCCCCCCGTGGGGGTTTTCTTTGCAAAACCAAAAAAAAAAAAATG
TGTGTAAAAGGGGCTCGTGGGCAAACCCACCCCCTTAAAATATACGAGGG
GAAAAAAAAGGGGTGATTAAACCCTNCCTGCCGCGGGCGGGTGGGGGATA
AAAAAAAAATTTCTCCCCCCCCCAAAAAAGGGTGTAGGGGGGGGGGGGCC
CCCCCCCCCGCGCGGGGGGGGAAAAACCCTCCCCCCGTTTTCTTTTTTTT
GGGGGGGCGCCCCCCCTGGGGGGAAAAAAAGGGGGCCTAACAAAAAAGGG
GGGGGGGGGGGGGCCCCCCCTATTGAGTGGTCACGGGGAGGCCCGCCCCG
ACAAACAACCCCCTGTGGGGGGGGGGGGGGGCAAAAAAAAAACACATTAT
TTAACCCCCCCCCCCCCACAAATGAACGGGGGGGGGAGGGGGAAAGAAAA
AAAAAATCTTATTTCTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_i16.b1 MSMg01no324_i16.b1 CHROMAT_FILE:
MSMg01no324_i16.b1 PHD_FILE: MSMg01no324_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:53 2005
         (306 letters)



>mm_chr5_60093739_60094444
          Length = 706

 Score =  545 bits (282), Expect = e-159
 Identities = 297/302 (98%), Gaps = 1/302 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttatatacgaaagtgcctaaactgaaaatacattaacagggaattcctgatc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcacttatata-gaaagtgcctaaactgaaaatacattaacagggaattcctgatc 470

                                                                       
Query: 65  aaaactatcaaacaaacacaaacaaacaaacaaacaaacaaaacaaaacaggtaataaca 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 469 aaaactatcaaacaaacacaaacaaacaaacaaacatacaaaacaaaacaggtaataaca 410

                                                                       
Query: 125 taaggaagtgatctccccaggtcactattctagttacttttgtaacttgaaacaaacaac 184
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taacgaagtgatctcccaaggtcactattctagttacttttgtaacttgaaacaaacaac 350

                                                                       
Query: 185 aaactagaggcatatatgaagggagagtattaagaagttgagtctagtacaggggaatgc 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 349 aaactagaggcatatatgaagggaaagtattaagaagttgagtctagtacaggggaatgc 290

                                                                       
Query: 245 cagggtcaggaagtgggagtgggtgggttggggatcagagcagggggagggtatagggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagggtcaggaagtgggagtgggtgggttggggatcagagcagggggagggtatagggga 230

             
Query: 305 ct 306
           ||
Sbjct: 229 ct 228


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)