BAC Information

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BAC

Clone NameMSMg01-324J15
Chromosome5 (Build37)
Map Location 79,216,202 - 79,304,317
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324J15.T7 (MSMg01no324_j15.b1)MSMg01-324J15.TJ (MSMg01no324_j15.g1)
ACCAG442710AG442711
length755762
length of high quality
(start - end)		595 (45 - 639)526 (74 - 599)
definitionCHROMAT_FILE: MSMg01no324_j15.b1 PHD_FILE: MSMg01no324_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:57 2005CHROMAT_FILE: MSMg01no324_j15.g1 PHD_FILE: MSMg01no324_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,216,202 - 79,216,792)(79,303,792 - 79,304,317)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTCTTGGCCTGGGTCCACTGTTTAACAACCTCTATCAATCACC
TTCATAAGGTTGAATTCAAAATCATTTGCTTGTGCTTCAGCTGTGTTAGG
ATATCCAGTGTTTTCTGGGTTCTAGTGATGCCATATTGCTCTTCCTCTTT
TGATTGTGTTCTTATACTGGCTTTTGGTAATCTGGTTGTCCCAGCCAGGT
CCCAAAGAATGCAGGCAGAGTTGTGGGATAAAAACAGGGCAGTTTACCAC
TGTTTCATGCACTTTAAGGGGACTTGTTGGTCAAGGTCTTGGGCCCAGGG
TCTTAGCTGGTTTTTCCTGATGCCTGCAGGTCTCCCAGAATGCAGCCCAA
TTTGTGCACGGGAAAATGTAGCACAGGGTACAGGATGCAATCTACCCACT
CTTAGGTGTCCCCAAGGGAGAACTACCAGGCAGGAAGTTTGAAGGAGGGG
TCTCTCATGCTGGCAGGCCTCCAAGAATGTAGACAGAGAAGTGGGCCTGA
AAAAAATCTATAAGTAAAACCAAAAAAAACCAAGATAGCTAAACCAGTCA
TGTAAAACAAAACAAAACAAAACAAAACAAAGAAACAAACTTAAAAAAAC
AAAAAAAAAACCAAAATATATATAAAAAAAATTCTGGAGGCATCAACCAT
CCATGAATTCAATCTGTTCTACAGAGCAATAGTTGAAAAAAAATCACATG
ATAGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGTAAAAATATTCTATTGCCACTGG
TGATCTTCTCAGTTTTTTGAGAACATGTTACGGTGGAGTGTGATGACCTG
TAACATACCAAGCATTTTTATTTTACAAAGTAGTGTTGTTTCTCTTCATC
ATCATACACAGCCACAAGAAGGCAGGATTTCATGATTTACCTCTACAACC
ATAAAACCTTGCATTTGTATTTTACAAAGTAGTGTTGTTTCTCTTCATCA
TCATACACAGCCACAAGAAGGCAGGCTTTCATGATTTACCTCTACAACCA
CAAAACCTCTCATTTACCTCCCCCCATTTTTTTAGACAATCAATAAAGAT
TTTCTGAGGGGATAATGGAATAGTGTACCTAATGAAAAACTCAATTAAAC
TTAAAAGATACAACTTTCATACAAATAAACAGAATATGATTCTGTGATTG
ATTTAATAAATCCTGCCTGTCTTGAATTTTCAGAAATAAGTCAATAAACA
CCGAGATCTATAAAGTGATTACCTTAAGTTAATATCAATTTTCTGGAATA
TAACAGTGACATATTTTAGTCTAGATTTGTGTATATGCTTTAAGGCCAAA
TTCTGAAAATGTAACAGTCTTTACAAAATGTTTAGGTATATATGGAGACA
GAAAAACTAGGAAAAAGGGAATTTCTTTACACCATATATTTTATTTTCTA
TGCAGAAAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_j15.b1 MSMg01no324_j15.b1 CHROMAT_FILE:
MSMg01no324_j15.b1 PHD_FILE: MSMg01no324_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:57 2005
         (595 letters)



>mm_chr5_79215998_79216992
          Length = 995

 Score = 1112 bits (575), Expect = 0.0
 Identities = 587/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctcttggcctgggtccactgtttaacaacctctatcaatcaccttcataag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctcttgggctgggtccactgtttaacaacctctatcaatcaccttcataag 264

                                                                       
Query: 65  gttgaattcaaaatcatttgcttgtgcttcagctgtgttaggatatccagtgttttctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgaattcaaaatcatttgcttgtgcttcagctgtgttaggatatccagtgttttctgg 324

                                                                       
Query: 125 gttctagtgatgccatattgctcttcctcttttgattgtgttcttatactggcttttggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttctagtgatgccatattgctcttcctcttttgattgtgttcttatactggcttttggt 384

                                                                       
Query: 185 aatctggttgtcccagccaggtcccaaagaatgcaggcagagttgtgggataaaaacagg 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatctggttgtcccagccaggttccaaagaatgcaggcagagttgtgggataaaaacagg 444

                                                                       
Query: 245 gcagtttaccactgtttcatgcactttaaggggacttgttggtcaaggtcttgggcccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagtttaccactgtttcatgcactttaaggggacttgttggtcaaggtcttgggcccag 504

                                                                       
Query: 305 ggtcttagctggtttttcctgatgcctgcaggtctcccagaatgcagcccaatttgtgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtcttagctggtttttcctgatgcctgcaggtctcccagaatgcagcccaatttgtgca 564

                                                                       
Query: 365 cgggaaaatgtagcacagggtacaggatgcaatctacccactcttaggtgtccccaaggg 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggaaaatgtagcacagggtacaggatgcaatctacccactcttaggtgtccccaaggg 624

                                                                       
Query: 425 agaactaccaggcaggaagtttgaaggaggggtctctcatgctggcaggcctccaagaat 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 agaactaccaggcaggaagtttgaaggaggggtctctcatgctggctggcctccaagaat 684

                                                                       
Query: 485 gtagacagagaagtgggcctgaaaaaaatctataagtaaaaccaaaaaaaaccaagatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtagacagagaagtgggcctgaaaaaaatctataagtaaaaccaaaaaaaaccaagatag 744

                                                              
Query: 545 ctaaaccagtcatgtaaaacaaaacaaaacaaaacaaaacaaagaaacaaa 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctaaaccagtcatgtaaaacaaaacaaaacaaaacaaaacaaagaaacaaa 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_j15.g1 MSMg01no324_j15.g1 CHROMAT_FILE:
MSMg01no324_j15.g1 PHD_FILE: MSMg01no324_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:57 2005
         (526 letters)



>mm_chr5_79303592_79304517
          Length = 926

 Score =  986 bits (510), Expect = 0.0
 Identities = 522/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtaaaaatattctattgccactggtgatcttctcagttttttgagaacatgttacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cttgtaaaaatattctattgccactggtgatcttctcagttttttgagaacatgttacgg 667

                                                                       
Query: 61  tggagtgtgatgacctgtaacataccaagcatttttattttacaaagtagtgttgtttct 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 666 tggagtgtgatgacctgtaacataccgagcatttttattttacaaagtagtgttgtttct 607

                                                                       
Query: 121 cttcatcatcatacacagccacaagaaggcaggatttcatgatttacctctacaaccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cttcatcatcatacacagccacaagaaggcaggatttcatgatttacctctacaaccata 547

                                                                       
Query: 181 aaaccttgcatttgtattttacaaagtagtgttgtttctcttcatcatcatacacagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaaccttgcatttgtattttacaaagtagtgttgtttctcttcatcatcatacacagcca 487

                                                                       
Query: 241 caagaaggcaggctttcatgatttacctctacaaccacaaaacctctcatttacctcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caagaaggcaggctttcatgatttacctctacaaccacaaaacctctcatttacctcccc 427

                                                                       
Query: 301 ccatttttttagacaatcaataaagattttctgaggggataatggaatagtgtacctaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccatttttttagacaatcaataaagattttctgaggggataatggaatagtgtacctaat 367

                                                                       
Query: 361 gaaaaactcaattaaacttaaaagatacaactttcatacaaataaacagaatatgattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaaaaactcaattaaacttaaaagatacaactttcatacaaataaacagaatatgattct 307

                                                                       
Query: 421 gtgattgatttaataaatcctgcctgtcttgaattttcagaaataagtcaataaacaccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 306 gtgattgatttaataaatcctgcctgtcttgaattttcagaaataagtcaaaaaacactg 247

                                                         
Query: 481 agatctataaagtgattaccttaagttaatatcaattttctggaat 526
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 agatctataaagtgattaccttaagttaatattaattttctggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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