Query= MSMg01no324_n05.b1 MSMg01no324_n05.b1 CHROMAT_FILE:
MSMg01no324_n05.b1 PHD_FILE: MSMg01no324_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:14 2005
(528 letters)
>mm_chr5_82920175_82921099
Length = 925
Score = 891 bits (461), Expect = 0.0
Identities = 509/527 (96%), Gaps = 5/527 (0%)
Strand = Plus / Plus
Query: 3 gaattctaagcttgttctctgttgagtatttgctactgatacttgagtttcatccattcc 62
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 203 gaattctaagcttggtctttgttgagtatttgctactgatacttgagtttcatctattcc 262
Query: 63 aaatggatcccaattttttaagcaacccctcctccagtctggactgtacctcaaatctcc 122
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 263 aaatggatcccaattttttaagcaccccctcctccagtctggactgcacctcaaatctcc 322
Query: 123 tcatctgtggctttctctattttgaagattagagcattataggtctattaaattcatttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcatctgtggctttctctattttgaagattagagcattataggtctattaaattcatttc 382
Query: 183 accatgactctattaaaatatactttttagatgttttcatatttatgtgtgttattctct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 accatgactctattaaaatatactttttagatgttttcatatttatgtgtgttattctct 442
Query: 243 ttagaaaatgcaaaagagctagactttagatagcttttctatctattggactaggaaaaa 302
| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 443 taagaaaatgcaaaagagctagactttagatagctttgcaatctattggactaggaaaaa 502
Query: 303 a-ttcatcagtaaatatgtataatgggtattttaaactactaaggaaaaatcaggtacaa 361
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 503 aattcatcagtaaatatgtataatgggtattttaaactactaaggaaaaatcagatacaa 562
Query: 362 ttattataatgacaagaccattttcttactgcagaaaaaaaaaaagcagtaataatccct 421
||||||||| ||||||| ||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 563 ttattataaggacaagatcatttccttactgcagaaaaaaa----gcagtagtaatccct 618
Query: 422 actggaaaacaataactgtacaatggatatatgtgggttgaatcacaaactatatggatt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actggaaaacaataactgtacaatggatatatgtgggttgaatcacaaactatatggatt 678
Query: 482 caaaagctttacttcctatttacttcgattaggagaaaacttgaaaa 528
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 caaaagctttacttcctatttacttcgattaggagaaaacttgaaaa 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 925
Length adjustment: 10
Effective length of query: 518
Effective length of database: 915
Effective search space: 473970
Effective search space used: 473970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_n05.g1 MSMg01no324_n05.g1 CHROMAT_FILE:
MSMg01no324_n05.g1 PHD_FILE: MSMg01no324_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:14 2005
(522 letters)
>mm_chr5_83123927_83124848
Length = 922
Score = 965 bits (499), Expect = 0.0
Identities = 514/519 (99%)
Strand = Plus / Minus
Query: 1 tttcttacagcatcattaagggtgtcttgtgttttatccttcattttatcattctgactg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 829 tttcttacagcatcattaagggtgtcctgtgttttatccttcattttatcattctgactg 770
Query: 61 ctttctctttatcctggtgcgtctgcctaaaggtttgtaaattttattaaacgtcttcgt 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 769 ctttctctttatcctggtgcgtctgcctaaaggtttgtaaattttattgaacgtcttctt 710
Query: 121 tttactactggttctctattttatgcttctgttgcatatattttagcatttgtgatctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttactactggttctctattttatgcttctgttgcatatattttagcatttgtgatctct 650
Query: 181 gtctttctgacagttatgtatttatatcactctccgttctttttgtttgtttattagaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 649 gtctttctgacagttatgtatttatatcactctccgttctttttgtttgtttattagact 590
Query: 241 taaatgccaccacaaccgtgtgagaccctgtatttatttcttacataggtggtatctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 taaatgccaccacaaccgtgtgagaccctgtatttatttcttacataggtggtatctgct 530
Query: 301 aacataaactagagtccacatatcactcaatctataccctataagatttgttatgtggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aacataaactagagtccacatatcactcaatctataccctataagatttgttatgtggag 470
Query: 361 gctggggagatcgaccctttgatgaagtgctttatacaaataatgtggattaaaatatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gctggggagatcgaccctttgatgaagtgctttatacaaataatgtggattaaaatatta 410
Query: 421 aaatttagatctccagagtctggaataaaaatttggactaggtgcatgctgataacctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaatttagatctccagagtctggaataaaaatttggactaggtgcatgctgataacctca 350
Query: 481 gtgctgagaaacagtcaggataattcctgggaaacagct 519
||||||||||||||||||||| |||||||||||||||||
Sbjct: 349 gtgctgagaaacagtcaggatgattcctgggaaacagct 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
