Query= MSMg01no324_n20.b1 MSMg01no324_n20.b1 CHROMAT_FILE:
MSMg01no324_n20.b1 PHD_FILE: MSMg01no324_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:17 2005
(660 letters)
>mm_chr5_31107170_31108229
Length = 1060
Score = 1058 bits (547), Expect = 0.0
Identities = 636/689 (92%), Gaps = 37/689 (5%)
Strand = Plus / Plus
Query: 9 ggagagctgg-tttaaaattcatgtggaacaacagaggactcagaagagtaaaatcagga 67
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 172 ggagagctggctttaaaattcatgtggaacaacagaggactcagaagagtaaagtcagga 231
Query: 68 aaaccttaaggagctggtgaaaccatcatgaatccaatcatgaagacggagccccagaca 127
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 232 aaaccttaaggagctggtgaaaccatcatgaatctagtcatgaagacggagccccagaca 291
Query: 128 gctcaacacctctcagtaggcctccctcccaaatatccctccacacccacccctccaacc 187
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 292 gctcaacacctctcagtaggcctccctctcaaatatccctccacacccacccctccaacc 351
Query: 188 aactcaacagactttgggaaacacactcagaccttatccaaacccccaaaaaacatggca 247
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 352 aactcaacagactttgggaaacacactcagaccttatccaaaccccgaaaacacatggca 411
Query: 248 ggcatgaagataagggggcacacacacaca------------------------------ 277
|||||||||||||||| |||||||||||||
Sbjct: 412 ggcatgaagataagggagcacacacacacacacacacacacacacacacacacgtacacg 471
Query: 278 ------cagtcccctgcagctagcagtctgctaagacagtggcctctaaggagcatatgt 331
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 472 cacatgcagtcccctgcagctagcagtctgctaaaacaatggcctctaaggagcatatgt 531
Query: 332 ttccctgaccagtctcatgctggggaaggaaaagctggagacctttacatcacccagagg 391
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 532 ttccctgaccagtctcatgctggggaagttaaagctggagacctttacatcacccagagg 591
Query: 392 gggacttgtcttctggaaggagtctgcactatgctggcattgactcaggacagactgaga 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gggacttgtcttctggaaggagtctgcactatgctggcattgactcaggacagactgaga 651
Query: 452 gccaaccacagcagtcagcattgggtcagtgagggccagagccacatcttggccagaaat 511
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 652 gccaacggcagcagtcagcattgggtcagtgagggccagagccacatcttgtccagaaat 711
Query: 512 gtacagtgaagcacacctcttgctctctacttaacctcatgtcagttctcagaccatggg 571
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 712 gtgcagtgaagcacacctcttgctctctacttaacctcatgtcagtactcagaccatggg 771
Query: 572 cttgggcataccattgaccctccttaccggttctcccaagggacatgcagtatgaatctt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cttgggcataccattgaccctccttaccggttctcccaagggacatgcagtatgaatctt 831
Query: 632 tttctgtctgttactattatttgcctgtg 660
|||||||||||||||||||||||||||||
Sbjct: 832 tttctgtctgttactattatttgcctgtg 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_n20.g1 MSMg01no324_n20.g1 CHROMAT_FILE:
MSMg01no324_n20.g1 PHD_FILE: MSMg01no324_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:17 2005
(596 letters)
>mm_chr5_31307874_31308868
Length = 995
Score = 1054 bits (545), Expect = 0.0
Identities = 584/597 (97%), Gaps = 3/597 (0%)
Strand = Plus / Minus
Query: 1 gctggatgttcattcagggtcattagtgagggatggcctcactaattagtaggggacctt 60
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 795 gctggatgttcatttagggtcattagtgagggatggcctcactagttagtaggggacctt 736
Query: 61 ggcaattaggtgaatttctaagtctgaggaagaccagggccaatggctcagctcgtggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggcaattaggtgaatttctaagtctgaggaagaccagggccaatggctcagctcgtggag 676
Query: 121 actaagtttcttcagttgtttcttgcatgacctttaacctttgccaccgt-tccggagac 179
||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct: 675 actaagtttcttcagttgtttcttgcatgacctttaaccgttgccacc-tctccggagac 617
Query: 180 ctggggtcgtcaggtgacgttgaatgaccctgagtgctgtgcagatgatgttgaattccc 239
||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 616 ctggggttgtcgggtgacgttgaatgatcctgagtgctgtgcagatgatggtgaattccc 557
Query: 240 aaggcttatccaagctctcagtaatctctgccttgaaaggaggcctgttgtcactttgga 299
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 556 aaggcttagccaagctctcagtaatctctgccttgaaaggaggcccgttgtcactttgga 497
Query: 300 cacttttaggtagcccaactggggacttattttagagcagacccccctgctgcttctggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cacttttaggtagcccaactggggacttattttagagcagacccccctgctgcttctggg 437
Query: 360 gctcttcctgtttcacatgggggggggcttccatccatcctggagaggtgtctgcagaaa 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gctcttcctgtttcacat-ggggggggcttccatccatcctggagaggtgtctgcagaaa 378
Query: 420 ccagatattacttggcactgagacccgggcatgtgagtgcagcccagcaagagtcatctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagatattacttggcactgagacccgggcatgtgagtgcagcccagcaagagtcatctc 318
Query: 480 caggttctgggcatgcctctgggtccctgggtgctgagaacatctgtttaggggcctatt 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 317 caggttctgggcatgcctctgggtccctgggtgctgagaacatctgtttaggggtctatt 258
Query: 540 tttctgacgtgttattgtggttttttatgaaaatggtccccacaggttcatatttga 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttctgacgtgttattgtggttttttatgaaaatggtccccacaggttcatatttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space: 577210
Effective search space used: 577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
