BAC Information

Click to search

BAC

Clone NameMSMg01-325H16
Chromosome5 (Build37)
Map Location 15,112,673 - 15,113,199
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325H16.T7 (MSMg01no325_h16.b1)MSMg01-325H16.TJ (MSMg01no325_h16.g1)
ACCAG443358AG443359
length739729
length of high quality
(start - end)		688 (46 - 733)525 (74 - 598)
definitionCHROMAT_FILE: MSMg01no325_h16.b1 PHD_FILE: MSMg01no325_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:59 2005CHROMAT_FILE: MSMg01no325_h16.g1 PHD_FILE: MSMg01no325_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATGTAACTAGATTTTTCAAATTTTTCACTTTATTAAGAAAGAG
AGAATCCCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAG
ACCCAACATTTTGCTGTTTACAGGAGACACATCTCAGAGAAAAAGATAGA
CACTACCTCAGAATAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTAT
GAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCC
AACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTTGTTCTCATCAAA
GGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCGCCAAA
TACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCAC
ACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCA
CCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACT
AACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTT
ATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTC
TCCAAAATTGACCACATAATAGGTCAGAAAACAGGCCTCAACAGATTCAA
AAATATTGAAATTGTCCCATGTATCCTATCAGATCACCA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTTCTCAGGTACAACTGGGTCTTTG
TCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAG
CATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGG
TAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATC
ATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTT
GTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCGGG
TGGGGTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCGTA
ACTCCTTCCGTGGGCACCCTGTTCCCTATTCTGACACTACTGCATATGCC
AGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATG
CCAGTACCTGGCAAACAGAAGTGGATGCTCACAGTCATTTATAGGATGGA
GCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAG
GGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCC
CAGAGCTTGTTTCTCTAGCTGCATATGTACCATAAGATGGCCTATNCTGC
CATCTTTGCGAAGAGAGGTCCCTAGGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_h16.g1 MSMg01no325_h16.g1 CHROMAT_FILE:
MSMg01no325_h16.g1 PHD_FILE: MSMg01no325_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:59 2005
         (525 letters)



>mm_chr5_15112473_15113397
          Length = 925

 Score =  924 bits (478), Expect = 0.0
 Identities = 514/532 (96%), Gaps = 12/532 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacatatcgtgc 260

                                                                       
Query: 61  aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgc 320

                                                                       
Query: 121 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatg 380

                                                                       
Query: 181 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgag 440

                                                                       
Query: 241 aggagcttggtggctgattatgggatggatccccgggtggggtagtctctggatggtcca 300
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 441 aggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtcca 500

                                                                       
Query: 301 tcctttcgtcttagctttgtctccgtaactccttccgtgggcaccct-----gttcccta 355
           ||||||| |||||||||||||||||||||||||||| |||     ||     ||||||||
Sbjct: 501 tcctttcttcttagctttgtctccgtaactccttccatgg-----cttttttgttcccta 555

                                                                       
Query: 356 ttctgacactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtct 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttctgacactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtct 615

                                                                       
Query: 416 tgtgaggctatgccagtacctggcaaaca--gaagtggatgctcacagtcatttatagga 473
           ||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||||||
Sbjct: 616 tgtgaggctatgccagtgcctggcaaacacagaagtggatgctcacagtcatctatagga 675

                                                               
Query: 474 tggagcacagggcctccaatggagaagctagagaaagcacccaaggagctga 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tggagcacagggcctccaatggagaagctagagaaagcacccaaggagctga 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |