CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCGATTGGCCTCACGCCATCGTCACAGACAACGATGCCATCTCCACA
GGACCCGTGTGCGTGCAGCTTGCATGTGGTCTCTAGGCTCAGAGGTTCAC
CCGTGTGGTGCTTCTCTGTAACGTACGACTGGACTTCAGTTGTGCAGCAC
AGCCTAGAGATTCGGGAACAGTCTTCAGTGGGGTGTGACTAGGCACACCT
ATAATCCCAGTTCTCAGATTGAGGGCAGGAGGATTGGTTCTGAGTTCAAA
ACCAGCCTAGGTGACATGGTAAGATCTTGCCTCCAAGACTGAATAAGGGG
ATGTGCTAACAAAAGGGTTTTAGATGAACTGGCTCAAAGGCACTTAAAAA
CTGTGTTTTGGTATGAGCGTTTGAAAGTAACAAAATGTTTTGGGGATTCA
GTTCTTTGTGAAGAAAACAGATAACCATATCAGAAAATGGTTTTTTTATA
ACTAAAATGAGATTAAGTACATTTGTAACTAGCCCTCCAAAAGCAAAAAC
AAACAAACAAACAAACAAACCTTTATTGATAGTGATAGGAGCAGGATGTA
GAGCTTCACTCANAGATGAGAAATTCTATTTCACTTTTTATCGCTGGGAT
TAAACCTATGACCCCATGCACGCTCCGCACCACCCCCGCCACTGAGCTAC
AATCCATCCTTTCTACTN

NNCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCGAATTCCACTACAGACCAGAAACAGCCCCACCC
CCACCCCCGGCACCATCTATGGACTGTGTCCGATGCCACCGCTCACACTT
TCTTTTGCCACCGCTCACACTTTCTTTTGTTTTGGGGTTTTTGTTTTTGT
TTGTTTTGTTTGTTTTTGGTTTTTTTTGTTTGTTGTTTTTTCGAGAAGGT
TTCTCTGTGTAGCCCTGCTTGTCCTGGAACTCACTTTGTAACCAGGCTGG
ACTCGAACTCGGAAATTTTCTCTGCTCTCGAGGCAGAGATTAAGGGATGG
TTCATCTAACCTGGCTGCCAGATGACACTCTTGAAAGTTGCACGGAGCTC
ACATTACCCCCACCCTTTCACAGAAACCCACCATTAAGACTGTCGCCTAA
AAAAACATCTACGAGAACTCTGAGAGAGAAGGCTACACCATTCTGTAAGA
GCTAATTGCGACATTGTTAATTGAGAAAACCCCATTGCACCGCTATGTAA
TAGAACATCTGAGAATAAACGCGGGTATGCCTGCTCCCGATATAGTCGTA
GAAACGATATACCCGTTATCAGAATTCCTGGCAGAAGGTTGGCCCGTATT
TCCTTATCTTTTAGGCTGTTGTAGACTTTCCCGGCGAGATGCATTTTTGT
CAGATACAC

Query= MSMg01no325_k24.b1 MSMg01no325_k24.b1 CHROMAT_FILE:
MSMg01no325_k24.b1 PHD_FILE: MSMg01no325_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:14 2005
         (567 letters)



>mm_chr5_127987808_127988774
          Length = 967

 Score =  948 bits (490), Expect = 0.0
 Identities = 547/566 (96%), Gaps = 2/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccgattggcctcacgccatcgtcacagacaacgatgccatctccacaggacccgt 63
           |||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 204 gaattccgattggcttcatgccatcatcacagacaatgatgccatctccacaggacctgt 263

                                                                       
Query: 64  gtgcgtgcagcttgcatgtggtctctaggctcagaggttcacccgtgtggtgcttctctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 gtgcgtgcagcttgcatgtggtctctaggctcagaggttcacccgtgtggtacttctctg 323

                                                                       
Query: 124 taacgtacgactggacttcagttgtgcagcacagcctagagattcgggaacagtcttcag 183
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacatactactggacttcagttgtgcagcacagcctagagattcgggaacagtcttcag 383

                                                                       
Query: 184 tggggtgtgactaggcacacctataatcccagttctcagattgagggcaggaggattggt 243
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 tggggtgtgactaggcacacctataatcccagttctcagactgagggcaggaggattggt 443

                                                                       
Query: 244 tctgagttcaaaaccagcctaggtgacatggtaagatcttgcctccaagactgaataagg 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 tctgagttcaaaaccagcctaggtgacatggtaagatcttgcctccaaaactgaataagg 503

                                                                       
Query: 304 ggatgtgctaacaaaagggttttagatgaactggctcaaaggcacttaaaaactgtgttt 363
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 504 ggatgtgctaacaaaagggttttagatgaaatggctcagaggcacttaaaaactgtgttt 563

                                                                       
Query: 364 tggtatgagcgtttgaaagtaacaaaatgttttggggattcagttctttgtgaagaaaac 423
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 564 tggtatgagcgtttgaaagtaacaaaatgttttggggattcagttccttatgaagaaaac 623

                                                                       
Query: 424 agataaccatatcagaaaatggttttttt-ataactaaaatgagattaagtacatttgta 482
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 agataaccatatcagaaagtggttttttttataactaaaatgagattaagtacatttgta 683

                                                                       
Query: 483 actagccctcc-aaaagcaaaaacaaacaaacaaacaaacaaacctttattgatagtgat 541
           |||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 actagcccccccaaaagcaaaaacaaacaaacaaacaaacaaacctttattggtagtgat 743

                                     
Query: 542 aggagcaggatgtagagcttcactca 567
           ||||||||||||||||||||||||||
Sbjct: 744 aggagcaggatgtagagcttcactca 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)