BAC Information

Click to search

BAC

Clone NameMSMg01-325L02
Chromosome5 (Build37)
Map Location 130,354,839 - 130,355,144
singlet/doubletsinglet
Overlap genePhkg1
Upstream geneRimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2
Downstream geneChchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325L02.T7 (MSMg01no325_l02.b1)MSMg01-325L02.TJ (MSMg01no325_l02.g1)
ACCAG443514AG443515
length722817
length of high quality
(start - end)
627 (45 - 671)---
definitionCHROMAT_FILE: MSMg01no325_l02.b1 PHD_FILE: MSMg01no325_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:14 2005CHROMAT_FILE: MSMg01no325_l02.g1 PHD_FILE: MSMg01no325_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAGGTCCTCCAGCCCTTGGGAGACAGCAGACCACAAAGGGCTGA
AGCTGTGTCCTGAGCAGACACTTATTGGAGTTGCTGTCTTGCTCCTCTTG
CGGAACTTTGGTACTTGGTGATGGAAGGCCGGCCTGCCAAAAATAAATCA
CAACTGCAAACCTGGGATGCAGGCCAAGGTCCAGCAGGGCTAGGCCTGGG
GCAGAACTACATCAGGGGTGACACCTGGCGGAGCCTGGGGAAAGCACATG
TGGCAGGGATAAAGCAAATGGCTCAGAGAAGACAAAGCCTTTTGTTTTTT
TTTATTTTTTATTTATTTATTTATTTATTTATTTTTTAGATTTATTTATT
TATTATATGTAAGTACACTGCAGCTGTCTTCAGACACACCAGAAGAGGGC
GTCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATT
TGAACTCTGGACCTTTGGAAGAATAGTCGGGGGCTCTTACCCACTGAGCC
ATCTCACCAGCCCGGTTTTTTAAAAAATAGGGGCTTTTGCTGAGCCAATG
TGTTGGAGAACACTTAGGAGGCAGAGGCAGGTAGATCTTTTGAGTTTGAC
GGATTTCCACAACAGCCAGAGTTAGACGTAGAAACCTGGCCTGGAGAAAC
CAAAGACAAACAAGCAAACTTT
NCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTTCGCGAAATTCAGGATCAGTGAGCGACAGTGTCT
CTAAGAACGTGGTGGTACACTGTAATCCCAGCACGGGGTTGGGGGGGTGG
TTGTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTN
TTTTTTTCTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTCTCCTT
CTTTTTTTTCTTCCCTTTTTTTTTTTTCCTTTTTCTTCCCCTTCCCTTCT
TTTTTTTTTTTTTTTTTTTTCTTTTCCCTTTTCCCTTTTTTTTTTTTTTT
TTTTTTTTTCCTTTTTTTTTTACTCTCCCCCTTTTCATTTATTTTTAATA
TTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTTTTCTTCTTTTCCTTTTCT
TTTTTTTTTTTTTTTTTTCTCTTTTTTTCTTTCTTTCTTTTCACTTTTTT
TTTCTTTTTTCTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTTTTCCT
CTCTTATTTTTTCTTTTCCTTTTTTTTTTCTCCTTTTTCTCCTCTTTCCT
TCTTTTTCCTCTTTTTTCCTTTTTTTTTTTTTCTTCCTTTTTCCCTTTCT
TTTATTTTCTTCCTTTCCCCCTCCTTTTTCTTCCTTCTTTTTTTCCCTTT
TCTTCTTTTTCTTTTTTCCCCCTTTTTTTTCCTTCTTTTCTCCCCCCTTT
TTTTTTTTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_l02.b1 MSMg01no325_l02.b1 CHROMAT_FILE:
MSMg01no325_l02.b1 PHD_FILE: MSMg01no325_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:14 2005
         (627 letters)



>mm_chr5_130354635_130355661
          Length = 1027

 Score =  553 bits (286), Expect = e-161
 Identities = 301/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaggtcctccagcccttgggagacagcagaccacaaagggctgaagctgtgt 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaggtcctggagcccttgggagacagcagaccacaaagggctgaagctgtgt 264

                                                                       
Query: 65  cctgagcagacacttattggagttgctgtcttgctcctcttgcggaactttggtacttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgagcagacacttattggagttgctgtcttgctcctcttgcggaactttggtacttgg 324

                                                                       
Query: 125 tgatggaaggccggcctgccaaaaataaatcacaactgcaaacctgggatgcaggccaag 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatggaaggctggcctgccaaaaataaatcacaactgcaaacctgggatgcaggccaag 384

                                                                       
Query: 185 gtccagcagggctaggcctggggcagaactacatcaggggtgacacctggcggagcctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtccagcagggctaggcctggggcagaactacatcaggggtgacacctggcggagcctgg 444

                                                                       
Query: 245 ggaaagcacatgtggcagggataaagcaaatggctcagagaagacaaagccttttgtttt 304
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 445 ggaaagcacatgtggcagggataaagcaaatggctcagaggagacaaagccttttggttt 504

                 
Query: 305 ttttta 310
           ||||||
Sbjct: 505 ttttta 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)