CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCACACTTCCCTGGGGAGGCAGGCCGTGACTCCTTCTGGGTCATC
ATGCATGTGAGTGTATGAAGGGCCTGACAGTCAGCATAACCAATAGCCAA
CACTGATGGACCCTTTCTTGGACTTCTTTGGTCACTTGTATTTGAGAACA
ACTGTTTCTATCTTGAGGATTGTTTGGTGTTGCACACAGTGTAGTTTAGG
AAAATGTTGCCCTAAAATATGGTTTTAGTTAATTAGAGGAAACATCTTAG
ACAAAATATTCTAGAAGTAATGAGAATAGTAGGCAGGTTTTGTCCATCTC
TTTGAGTGGACTCCATGACTTGGGTTCAGCCTTTCAATATTTATTTCCTT
GTCAGAAGATTCTTTTTAAAGATGTATCTAGTCTAATTGCCCTGTAATCA
CAAGACATGCAAGTTTAATGTCAGTCTCTTAATATTTTTATATTTGAAAA
ATTTAAAACGTGTGGAAAAATTAAGACATTTTTACCAAATTTAGCTGTTA
CAAAATCGTGTAATATTATTTACTGTTTTTTTCCTAGGCTGTTTTCAAAG
CATAATGAAAAATGTCATTTTTCTTAGTTTTGAGTGTGCACACTTTTCTT
GGCAGGACTTAGGGTTATGGAGAATGGAGCAGGGCCTTGTGACTAGAATA
GATGAATCTGCTGTGCCTTTGAGCTTCTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAACCACTTAGATTTGACCTT
AGTACAAGGAGACACCCAGGGATCCACCCCATAATCAGACTCCAAACACA
GACACCATTGCATACTCCAGCAAGATTTTGCTGAAAGGATCCTGATATAG
CTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAGAAGTGGATGC
TCACAGTCAGCTATTGGATGCAACACAGGGTCTCCAATGGAGGAGCTAGA
GAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAAC
AGTATGAACTAACAAGTACCCCCAGAGCTAATGTCTCTAGCTGCATATGT
AGCAGAATATGGCCTAGCAGGCCATCATTGGGAAGAGAGGCCCCTTGGTT
TTGTAAACTTTGTCTGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTG
GGAGTGGGTGGGTAGGAGAGTTGGGGGGNANNNNNNNNNTNTNNTNNNNN
NNNTNNTNTTTNNTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTCTTTTTTTNTTTTTNTTNNTTTNTTTTTTTTTNTNCCTCT
TTCTTTTTTCCCTCCCTTTTTCCCTCCCCCCCCCCCTTTTTTTTTCTCCC
TTCTTTTTTTCCTTCCCTCCCTCTTTTTCTTCCN

Query= MSMg01no325_l15.b1 MSMg01no325_l15.b1 CHROMAT_FILE:
MSMg01no325_l15.b1 PHD_FILE: MSMg01no325_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:17 2005
         (679 letters)



>mm_chr5_5307371_5308449
          Length = 1079

 Score = 1208 bits (625), Expect = 0.0
 Identities = 631/633 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccacacttccctggggaggcaggccgtgactccttctgggtcatcatgcatgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaattcccacacttccctggggaggcaggccgtgactccttctgggtcatcatgcatgtg 574

                                                                       
Query: 65  agtgtatgaagggcctgacagtcagcataaccaatagccaacactgatggaccctttctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agtgtatgaagggcctgacagtcagcataaccaatagccaacactgatggaccctttctt 514

                                                                       
Query: 125 ggacttctttggtcacttgtatttgagaacaactgtttctatcttgaggattgtttggtg 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 513 ggacttctttggtcacttgtatttgagaacaattgtttctatcttgaggattgtttggtg 454

                                                                       
Query: 185 ttgcacacagtgtagtttaggaaaatgttgccctaaaatatggttttagttaattagagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttgcacacagtgtagtttaggaaaatgttgccctaaaatatggttttagttaattagagg 394

                                                                       
Query: 245 aaacatcttagacaaaatattctagaagtaatgagaatagtaggcaggttttgtccatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaacatcttagacaaaatattctagaagtaatgagaatagtaggcaggttttgtccatct 334

                                                                       
Query: 305 ctttgagtggactccatgacttgggttcagcctttcaatatttatttccttgtcagaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctttgagtggactccatgacttgggttcagcctttcaatatttatttccttgtcagaaga 274

                                                                       
Query: 365 ttctttttaaagatgtatctagtctaattgccctgtaatcacaagacatgcaagtttaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttctttttaaagatgtatctagtctaattgccctgtaatcacaagacatgcaagtttaat 214

                                                                       
Query: 425 gtcagtctcttaatatttttatatttgaaaaatttaaaacgtgtggaaaaattaagacat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gtcagtctcttaatatttttatatttgaaaaatttaaaacgtgtggaaaaattaagacat 154

                                                                       
Query: 485 ttttaccaaatttagctgttacaaaatcgtgtaatattatttactgtttttttcctaggc 544
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ttctaccaaatttagctgttacaaaatcgtgtaatattatttactgtttttttcctaggc 94

                                                                       
Query: 545 tgttttcaaagcataatgaaaaatgtcatttttcttagttttgagtgtgcacacttttct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tgttttcaaagcataatgaaaaatgtcatttttcttagttttgagtgtgcacacttttct 34

                                            
Query: 605 tggcaggacttagggttatggagaatggagcag 637
           |||||||||||||||||||||||||||||||||
Sbjct: 33  tggcaggacttagggttatggagaatggagcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)