BAC Information

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BAC

Clone NameMSMg01-325N20
Chromosome5 (Build37)
Map Location 114,137,210 - 114,297,752
singlet/doubletdoublet
Overlap geneLOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c
Upstream geneMyo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1
Downstream geneSsh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325N20.T7 (MSMg01no325_n20.b1)MSMg01-325N20.TJ (MSMg01no325_n20.g1)
ACCAG443640AG443641
length735757
length of high quality
(start - end)
254 (61 - 314)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no325_n20.b1 PHD_FILE: MSMg01no325_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:27 2005CHROMAT_FILE: MSMg01no325_n20.g1 PHD_FILE: MSMg01no325_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,137,210 - 114,137,463)(114,297,505 - 114,297,752)
sequence
GCGGCCGCTATACGACTCATATAGGTTCCAAATACCGCGGAATTCCTGGG
AGAATCTCGCCACATGAAACCCTGGCCTTCAGTCACAGCCATCAGTGCAT
ACATGCTGACTAGCAGATGGTCAGATGTCTGCATGCAAGTGAAGCCTCTC
TAGGTATAAACATCTGGCTCCAGTTTCTTGCTGACTTATTTTAAGACAAA
GTTCCTTGTAGTTCAGGCTATCCTGGAACTTGCTATGATGCCAAGGATCA
CCCAGCCTCCACCTCCCTAGCGTTGACATGGTAAGTACAAACCACAGTAC
CCATTCAATGCAGTGCTGATACAAATCCAGGGCTTCGTGTATGCTAGGCA
AGTGGTCTAACCACTTAGCAACATCCCCAGCTGGGAAGACAGCTCTGTGG
CTCTGTGCTCCCCCCAACACCTGAGCTCCCCAGTATCCACATAAAAGCCA
AGTCCAACCAATCATGACTGTAACCCTATGATGGTTTGTATATGCTCAGC
TCAGGGAGTGACACTATTATAAGGCTTGGCCTCGTCGGATTGATTGTGAC
CTCTTCAGAGTGTTTGTGTCCTCGTTGGAGTGGGTGTGTCCTTGTTGCAA
TAGGTGTGTCACTGTGATTGTGTGCTATAACACTCTCATCCTAGTCACTT
GGAAGTCAGTCTTCTTCTATCATTCTTCATATGAAAATGTAGAACTCTCA
GCTCCTCCTGCCCCATGCCTGCCTTGTAGCTTCCA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCCGAATATCTCAGGAACAAGGGGAAACAATGGCTTGTA
ATTCAGGCAGATGTGCTTAGAGGAGCAGTGCACAGCTACTGAAGTTAGGT
TTCCATGAACTCTGGGTGGTGTGAGTACCACCCACTTAAAGAAAATGTCT
GCATCACTGTGGGCACTGACTTGTCTCTGGTTCTCAGGGTGACAGCAGTA
TCCGCTATTTTGAGATCACGGATGAATCCCCATATGTCCACTACCTCAAC
ACATTCAGCAGCAAGGAGCCTCTTTTTATTTATGGGCTACATGCCCAAGC
GGGGCCTTGACGTCAACAAGTGCGAAACTGCCAGGTAAAGAATTGAACCC
AACGTGTCCAGTTGTTCACCACCCACCTTGCCAGCTGCAGGACTACCTCA
GTGTGTTTGCAGCTGACTGTGGCTTGTGGCCTGTCCTTGTAGTGGATCAT
AGCTGGCACACATCAGTGCTCAGTGCCTTGTGTGCTCACTTCCTTCATGT
TCAGGCTATTGTTTTTGTTCCCTGTAAGACATGTGGTTATATTCTGTGAT
ATACTATGTATTATCCCCTTACCCCGTTTCCCAGCTGCCCTTATGCTTTT
TTGTTTTTTGACTAGGCCACTTTTTTGCCTTTCATTTTGCCATTCCTTGA
TTCCCTTTTCCCCCTTTTTTCCCTTCTTTTTCCCCCCTTTTTTTTTTTTT
TCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_n20.b1 MSMg01no325_n20.b1 CHROMAT_FILE:
MSMg01no325_n20.b1 PHD_FILE: MSMg01no325_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:27 2005
         (254 letters)



>mm_chr5_114137010_114137663
          Length = 654

 Score =  453 bits (234), Expect = e-132
 Identities = 249/254 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgaaaccctggccttcagtcacagccatcagtgcatacatgctgactagcagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cacatgaaaccctggccttcagtcacagccatcagtgcatacatgttgactagcagatgg 260

                                                                       
Query: 61  tcagatgtctgcatgcaagtgaagcctctctaggtataaacatctggctccagtttcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tcagatgtctgcatgcaagtgaagcctctctaggtataaacatctggctccagttccttg 320

                                                                       
Query: 121 ctgacttattttaagacaaagttccttgtagttcaggctatcctggaacttgctatgatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ctgacttattttaagacaaagttccttgtagttcaggctatcctggaactcgctatgatg 380

                                                                       
Query: 181 ccaaggatcacccagcctccacctccctagcgttgacatggtaagtacaaaccacagtac 240
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ccaaggatcacccagtctccacctccctagagttgacatggtaagtacaaaccacagtac 440

                         
Query: 241 ccattcaatgcagt 254
           ||||||||||||||
Sbjct: 441 ccattcaatgcagt 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no325_n20.g1 MSMg01no325_n20.g1 CHROMAT_FILE:
MSMg01no325_n20.g1 PHD_FILE: MSMg01no325_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:27 2005
         (248 letters)



>mm_chr5_114297305_114297952
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaacaaggggaaacaatggcttgtaattcaggcagatgtgcttagaggagcagtgcac 60
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggaagaaggggaaacagtggcttgtaattcaggcagatgtgcttagaggagcagtgcac 389

                                                                       
Query: 61  agctactgaagttaggtttccatgaactctgggtggtgtgagtaccacccacttaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agctactgaagttaggtttccatgaactctgggtggtgtgagtaccacccacttaaagaa 329

                                                                       
Query: 121 aatgtctgcatcactgtgggcactgacttgtctctggttctcagggtgacagcagtatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatgtctgcatcactgtgggcactgacttgtctctggttctcagggtgacagcagtatcc 269

                                                                       
Query: 181 gctattttgagatcacggatgaatccccatatgtccactacctcaacacattcagcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctattttgagatcacggatgaatccccatatgtccactacctcaacacattcagcagca 209

                   
Query: 241 aggagcct 248
           ||||||||
Sbjct: 208 aggagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)