BAC Information

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BAC

Clone NameMSMg01-325O04
Chromosome5 (Build37)
Map Location 34,813,286 - 34,980,073
singlet/doubletdoublet
Overlap geneBC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik
Upstream gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4
Downstream geneNol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325O04.T7 (MSMg01no325_o04.b1)MSMg01-325O04.TJ (MSMg01no325_o04.g1)
ACCAG443656AG443657
length756763
length of high quality
(start - end)		325 (46 - 370)329 (82 - 410)
definitionCHROMAT_FILE: MSMg01no325_o04.b1 PHD_FILE: MSMg01no325_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:28 2005CHROMAT_FILE: MSMg01no325_o04.g1 PHD_FILE: MSMg01no325_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,813,286 - 34,813,607)(34,979,747 - 34,980,073)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGATCCGCGG
AATTCACAGGGATCTGCTTGCCTCTGCCTCCCCAGCAATGGGATTAAAGG
TATGCACCAAAACACACAGACTCTCTCCCAAGGCTTGTACCTCTAGTTGT
TTTCTCTTACTGAATCTTATTCTGCTAGAAATGGTTGTAGTGTTTCCCTG
TTAACTGAGATGCTGGCTCTAGTGTTAAGGTCTCACTGTCCTACCTAATG
CTAGGACGGGAGCCAGTGACTCTTGACATTCTTCATTGTCTTTGTGAGAA
ATAGGTGTTGAATTTTATCAAGGTGGGGTTTTGTGGGTAGTTTTTTTTCT
CCTCAGAACTATTTAGAATAATGGTATTGTTTTAGTTTTCCAACATTAAA
CCAACCTTAAATTCCTGCACCACTTATCATTTGCCTGGTGCTAATTATAT
TCTTTGGTTTAGGTTCTATTTGTTGTTACTTTATTGACTTGATATTCGTA
GGTTTATAACTTTCCTTTTTGTTGACGTTCTTTAATTACTTTGCTGTATT
TGCACAATGAGCGATGGGAGTCGTTTTCTATTATGTTCCTTCCAAAAATA
TCTGGGCCTTTTTCAGCATTATCATTTTTTATATCTGTGACGGCCTTTAT
TGTTATATTGTACCCCGTTCAAATATTTATAAAAATTTTTAAAATGTTTC
TGTGTATGATTCAATTTGTAATTTTTAACTTCAACTTCTTATATTGTAAT
CGCGTC

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGTGGCTACATGAGACC
CTGATTCAAAAGAAAGATACATAGGTACCAAGGAGACTGAACTGCACAGA
CAAGCTGTCTCTTAGATACACTTAGCTCTTCAGAACTTCACCGCTTGCTT
CTAATGCATCTGGAAGCCTGCAAGCCTTCTCTATACTTGGCTGCTGGGAG
ACTCCAAGCCCAGTTCCCGCCACAGCACGGCCTCCCGGAAGAGGAGGTGC
CTGTTCCGAAGCCTCCGGGGTGTGTTTGCTATCCAGGGAGGTTCCCTGTT
CATCCACCCGTTTGTCCCCGCCTGGAGCTGCGGCACATGTGCACAGGTCC
CAGCTGGGCACGCGGTACCCCCACGTTTCGATAGATATCGTGTGAGGAGG
CCGAAGTGGTACACGAACTGGAGCTCATGTCGCCTACGATTCCCCAACCA
GGGATTCCCGTCTTCTCTTCGCTATTCGCTTTACAACAGGGGTGTTACCT
GAACCACTGCGGTTCCTGAGCTTTATTGCTGTCCCTAGGTTGGTAAGGTA
GCCGCTCCCTTGAACGGCGTTGCCATTGACCGCCTTGTTACCCTTTATCC
GTTATTTCTTGGTAAAGAAACCTTGCAAACTCCAGCTTTACAATTTGCAC
AAGTTTAAACGGGTTTCTGTCCTTCTTCTCAAACTCTTTCCTTTCCACCC
TACCTGGTGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_o04.b1 MSMg01no325_o04.b1 CHROMAT_FILE:
MSMg01no325_o04.b1 PHD_FILE: MSMg01no325_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:28 2005
         (325 letters)



>mm_chr5_34813083_34813807
          Length = 725

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagggatctgcttgcctctgcctccccagcaatgggattaaaggtatgcacc 63
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 204 ggaattcacagggatctgcttgcctctgcctccccagcactgggattaaaggtgtgcacc 263

                                                                       
Query: 64  aaaacacacagactctctcccaaggcttgtacctctagttgttttctcttactgaatctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaacacacagactctctcccaaggcttgtacctctagttgttttctcttactgaatctt 323

                                                                       
Query: 124 attctgctagaaatggttgtagtgtttccctgttaactgagatgctggctctagtgttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attctgctagaaatggttgtagtgtttccctgttaactgagatgctggctctagtgttaa 383

                                                                       
Query: 184 ggtctcactgtcctacctaatgctaggacgggagccagtgactcttgacattcttcattg 243
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtctcaccatcctacctaatgctaggacgggagccagtgactcttgacattcttcattg 443

                                                                       
Query: 244 tctttgtgagaaataggtgttgaattttatcaaggtggggttttgtgggtagtttttttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctttgtgagaaataggtgttgaattttatcaaggtggggttttgtgggtagtttttttt 503

                                 
Query: 304 ctcctcagaactatttagaata 325
           ||||||||||||||||||||||
Sbjct: 504 ctcctcagaactatttagaata 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_o04.g1 MSMg01no325_o04.g1 CHROMAT_FILE:
MSMg01no325_o04.g1 PHD_FILE: MSMg01no325_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:29 2005
         (329 letters)



>mm_chr5_34979547_34980275
          Length = 729

 Score =  586 bits (303), Expect = e-172
 Identities = 321/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgtggctacatgagaccctgattcaaaagaaagatacataggtaccaaggagactgaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 527 accgtggctacatgagaccctgattcaaaagaaagatatataggtaccaaggagactgaa 468

                                                                       
Query: 61  ctgcacagacaagctgtctcttagatacacttagctcttcagaacttcaccgcttgcttc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctgcacagacaagctgtctcttacatacacttagctcttcagaacttcaccgcttgcttc 408

                                                                       
Query: 121 taatgcatctggaagcctgcaagccttctctatacttggctgctgggagactccaagccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 407 taatgcatctggaagcctgcaagccttctctatacttggctgctgggagactccaaaccc 348

                                                                       
Query: 181 agttcccgccacagcacggcctcccggaagaggaggtgcctgttccgaagcctccggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agttcccgccacagcacggcctcccggaagaggaggtgcctgttccgaagcctccggggt 288

                                                                       
Query: 241 gtgtttgctatccagggaggttccctgttcatccacccgtttgtccccgcctggagctgc 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtggctgctatccagggaggttccctgttcatccacccgtttgtccccgcctggagctgc 228

                                      
Query: 301 ggcacatgtgcacaggtcccagctggg 327
           ||||| |||||||||||||||||||||
Sbjct: 227 ggcacgtgtgcacaggtcccagctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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