Query= MSMg01no325_o16.b1 MSMg01no325_o16.b1 CHROMAT_FILE:
MSMg01no325_o16.b1 PHD_FILE: MSMg01no325_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:31 2005
(667 letters)
>mm_chr5_38411239_38412308
Length = 1070
Score = 1185 bits (613), Expect = 0.0
Identities = 653/667 (97%), Gaps = 3/667 (0%)
Strand = Plus / Plus
Query: 4 ggaattccagatcaatggccactagtgggacccgacttgaaagtcaaggtgagatttcga 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagatcaaaggacactagtgggacccgacttgaaagtcaaggtgagatttcga 263
Query: 64 acaggatctttctgtgacaaagaacttcactaggatatatgaacatgtgatatgacatga 123
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 acaggatctttctatgacaaagaacttcactaggatatgtgaacatgtgatatgacatga 323
Query: 124 ttttgagagttgaccttttatttcttagataaacatgctaaataaagcatctgggggcag 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttgagagttgatcttttatttcttagataaacatgctaaataaagcatctgggggcag 383
Query: 184 caggcagcatgct-agcaagttacattcaggtaattcaagaaaagaaaattctttgcaca 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caggcagcatgcttagcaagttacattcaggtaattcaagaaaagaaaattctttgcaca 443
Query: 243 acatctgcactttctctgtaggtttgagattatgttgagcacaggtgcacatatgaatag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatctgcactttctctgtaggtttgagattatgttgagcacaggtgcacatatgaatag 503
Query: 303 gcacttattcctcggggattagaaccacactcctctgcctttgttagagtaaccatgtcc 362
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgcttattcctcggggattagaaccacactcctctgcctttgttagagtaaccatgtcc 563
Query: 363 aatactgactggcccatgagagctgtgtgacctggtccagctgctttgtactttcctttc 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatactgactggtccatgagagctgtgtgacctggtccagctgctttgtactttcctttc 623
Query: 423 ttgtagccgttctggcatcctggatgtttctgcttgtgcccagccctctcccacctctaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgtagccgttctggcatcctggatgtttctgcttgtgcccagccctctcccacctctaa 683
Query: 483 gtcagtggctgcccctttgcttggtgtacggcacctacatttctacccatggcttttctc 542
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 684 gtcagtggctgcccctttgcttggtgtacggtacctacatttctacccatggcttttctc 743
Query: 543 actgcctctggactatct--gccttaatgtcccccatgagaccttctagggcagctcctc 600
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgcctcgggactatctctgccttaatgtcccccatgagaccttctagggcagctcctc 803
Query: 601 acccaggtcacgtgctcagcacctgctttaaattcctttcttcatagttatgatctagga 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 804 acccaggtcacgtgctcagcacctgctttaacttcctttcttcatagttatgatctagga 863
Query: 661 agctagt 667
|||||||
Sbjct: 864 agctagt 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1070
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1060
Effective search space: 696420
Effective search space used: 696420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_o16.g1 MSMg01no325_o16.g1 CHROMAT_FILE:
MSMg01no325_o16.g1 PHD_FILE: MSMg01no325_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:31 2005
(606 letters)
>mm_chr5_38556914_38557921
Length = 1008
Score = 982 bits (508), Expect = 0.0
Identities = 556/572 (97%), Gaps = 2/572 (0%)
Strand = Plus / Minus
Query: 4 ccttccctcacctcctgactttacggaaggggaaactgaggcctgggagagcatgctttg 63
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 573 ccttccctcacctcctgactttacggaagggggaactgaggcctgggagagcatgctttg 514
Query: 64 cttgacccctcacagctcatgactctgctactcccgtggagcagaggtttcggggtgtga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cttgacccctcacagctcatgactctgctactcccgtggagcagaggtttcggggtgtga 454
Query: 124 ctgacacagctggtgcaggggtgatatcgggcacagagactggccattcctactggactc 183
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 453 ctgacacagctggtgcaggggtgatatcaggcacagagactggccattcctagtggactc 394
Query: 184 cagagctgggattg-ggagcctgagcaaaaggatgggaaggtgcagggggcatggagggg 242
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagagctgggattgagcagcctgagcaaaaggatgggaaggtgcagggggcatggagggg 334
Query: 243 ctgtggctcaggcaggcagaaggcgctcttctggtgtctaccttgttcccttctttggct 302
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgtggttcaggcaggcagaaggcgctcttctggtgtctaccttgttcccttctttggct 274
Query: 303 gacaccttcccca-aaatcttaattatttctcgttcaggcatgaaacggttcagctcagg 361
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gacaccttccccataaatcctaattatttctcgttcaggcatgaaacggttcagctcagg 214
Query: 362 atccgaggctcagaagtcatggcggcaggaatttgaggcagccagttgcatcccatctgc 421
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct: 213 atccgaggctcagaagtcatggcggcaggaatttgaggcagccggtcgcatcccatccgc 154
Query: 422 agctggggagacgaatgatcttgacatgttccatctctcctttatgttcagtccaggacc 481
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 153 agctggggagacgaatgatcttgatatgttccatctctcctttgtgttcagtccaggacc 94
Query: 482 ccagcccatgaaatggtgccatttgcattcagcttgggccatcccacatcaaaggaccca 541
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 93 ccagcccatgaaatggtgccatttgcattcatcttgggccatcccacctcaaaggaccca 34
Query: 542 ctctaaagacaatctcacaggcatgtccacag 573
|||||||||| |||||||||||||||||||||
Sbjct: 33 ctctaaagacgatctcacaggcatgtccacag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1008
Length adjustment: 10
Effective length of query: 596
Effective length of database: 998
Effective search space: 594808
Effective search space used: 594808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
