Query= MSMg01no326_a08.b1 MSMg01no326_a08.b1 CHROMAT_FILE:
MSMg01no326_a08.b1 PHD_FILE: MSMg01no326_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:38 2005
(636 letters)
>mm_chr5_72327620_72328655
Length = 1036
Score = 1102 bits (570), Expect = 0.0
Identities = 608/632 (96%), Gaps = 18/632 (2%)
Strand = Plus / Minus
Query: 5 gaattcattacatgttgcttgtattgcatatgttttgtggactagctatgtgagataacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 gaattcattacatgttgcttgtattgcatatgttttgtggactagctatgtgagataacc 935
Query: 65 accactaaatgaagaactggaggtagttaatgattgttgacaggaataactggttctccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 accactaaatgaagaactggaggtagttaatgattgttgacaggaataactggttctccc 875
Query: 125 caggatgtgtcctatagtagttatccaataccaagtatacatggttattcaacaccaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 caggatgtgtcctatagtagttatccaataccaagtatacatggttattcaacaccaagt 815
Query: 185 ggttagacttacacatctttgttggtaacgtatctttcaataaaccctcaagcacaaggc 244
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 814 ggttagacttacacatttttgttggtaacgtatctttcaataaaacctcaagcacaaggc 755
Query: 245 ttgaatcctagttagtgtttctagctaccataaggctgtaatctgttttgtagaagaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttgaatcctagttagtgtttctagctaccataaggctgtaatctgttttgtagaagaaaa 695
Query: 305 tatatgtgctggataagtgttatttaggcttgaatttatatacaatttcctagaggcaag 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tatatgtgctagataagtgttatttaggcttgaatttatatacaatttcctagaggcaag 635
Query: 365 actgacaaacttatttgtctagtaaaattataatacacctttgaagaaatgattatactg 424
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 634 actgagaaatttatttgtctagtaaaattataatacacctttgaagaaatgattatagtg 575
Query: 425 aattatagatagtattctgataggacaagtgaggaaaataagatttatttaattaaaata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aattatagatagtattctgataggacaagtgaggaaaataagatttatttaattaaaata 515
Query: 485 atgagaaaagatgatgttggagaggaagtttggggaattttagaaggatacatagacata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atgagaaaagatgatgttggagaggaagtttggggaattttagaaggatacatagacata 455
Query: 545 tactgcacacacacacacacacacacacacacacacacacacacacacacacacacacac 604
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 454 tactg------------------cacacacacacacacacacacacacacacacacacac 413
Query: 605 acacgcctatatgatgaggacttcatgcagtc 636
||||||||||||||||||||||||||||||||
Sbjct: 412 acacgcctatatgatgaggacttcatgcagtc 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_a08.g1 MSMg01no326_a08.g1 CHROMAT_FILE:
MSMg01no326_a08.g1 PHD_FILE: MSMg01no326_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:39 2005
(550 letters)
>mm_chr5_72161444_72162392
Length = 949
Score = 965 bits (499), Expect = 0.0
Identities = 537/555 (96%), Gaps = 11/555 (1%)
Strand = Plus / Plus
Query: 1 tattggctcacctccaagttaatggtgcaactaattgtattgcctaatcttaattgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattggctcacctccaagttaatggtgcaactaattgtattgcctaatcttaattgtcaa 260
Query: 61 tttgacacctctgggaagaggaaaccccagttgaagtattgcttccatcagattggccgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tttgacacctctgggaagaggaaaccccagttgaagtattgcttccatcagattggtcgc 320
Query: 121 tcagtatgtctgtggatatttttctgatttctcattgatgtcagagggctcagcccattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtatgtctgtggatatttttctgatttctcattgatgtcagagggctcagcccattg 380
Query: 181 taggttggccgttcttaggaaagtggctctgggattgcataagaaaggtagctgaagttg 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 taggttggccgttcttaggaaagtggctctggggttgcataagaaaggtagctgaagttg 440
Query: 241 agtctggtaataagccaggaagcagcattgctctgtagtccctgcttaaagattctgcct 300
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctgggaataagcctggaagcagcattgctctgtagtccctgcttaaagattctgcct 500
Query: 301 tgactcccagcattgcttctctcagtgatgaaatgcagaccccccc-----gaggaaata 355
||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct: 501 tgactcccagcattgcttctctcagtggtgaaatgcagacc-----tttaagatgaaata 555
Query: 356 aactctttcttccaaagatgctctggtcattgtacttatcacagcaatggaaaggtatac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aactctttcttccaaagatgctctggtcattgtacttatcacagcaatggaaaggtatac 615
Query: 416 agaactctataaaccatataataaaaaaaaacaattttacctttatttgtttgattggaa 475
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 616 agaactctataaaccatataataaaaaaaa-caattttacctttatttgtttgattggaa 674
Query: 476 tgtctaccatttgcattttttggttagcattatgcccatctgatatggaacacctatcta 535
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 675 tgtctaccatttgcattttttggttagcattatgcccatctgatatcgaacacctatcta 734
Query: 536 gcttttctattaact 550
|||||||||||||||
Sbjct: 735 gcttttctattaact 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 949
Length adjustment: 10
Effective length of query: 540
Effective length of database: 939
Effective search space: 507060
Effective search space used: 507060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
