BAC Information

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BAC

Clone NameMSMg01-326E03
Chromosome5 (Build37)
Map Location 7,067,122 - 7,067,697
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326E03.T7 (MSMg01no326_e03.b1)MSMg01-326E03.TJ (MSMg01no326_e03.g1)
ACCAG443929AG443930
length740745
length of high quality
(start - end)
588 (45 - 632)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no326_e03.b1 PHD_FILE: MSMg01no326_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:56 2005CHROMAT_FILE: MSMg01no326_e03.g1 PHD_FILE: MSMg01no326_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCATAATCAATGTCCAATAATATAATCCATAAGGAAATTTTTGGAGA
AAGTAATGTGAAAGTATTTTTACTTCAATAAGTTCAATTTACTTGTTTTA
CTAAAGTATAATTGACAAATTTGATGATTTTAAGTACTTAATATGATTTA
TACAGATTTGGCTTTCTATCATTAGCAAATTAGCAAGCAAATACAAAGTA
AAAATCTGTAATCTTTTCTTCCTGGAGTACTTGAAAGAATATTATAATCA
CTTCTGTCCTACTTAGATGTGAGAAGATCCTACATAAACTGTTTCTTATA
ACATGTGCTTTCTTAGTGTGGAGAGAACTAAGAGAAAAGTATCTTTCAAC
CTCATACATCCTAGATAACCTCAATGTAGTAGAGAAAGAAGCTAATGACC
AACTTCTCTATGCCACTCAAATTCCACTCAAGAGAGAGAACATCCTTACT
GCTCTGCATCTGCAAGAAAGCTCAAGTCCAAGTGGATCAAGGCACTCCAC
ATAAAACCAGATACCCTGAAAGGACCCTGATAAAGCTGTCTTGTGCGAGG
CTAGGGCAGTGCCTGGTAAATACAGAAGTGGATGCTCACAGTCATCTATA
AGATGGAACAATAGTTGAGATAAAGGGACCTATAGTGGCTATTCCTGGGT
GTCTACTTGAATATATTTGGAATGAACTACAATCCACAAN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCTAGAAATTCTCAATAAAGGAGTCAGAATCTAAAT
GACTTATGAATATATAAAGAAGTAGTCAACCAAACAGGCTGAGAAAGAAA
TTAGGGAAACCATACTCTTCTCAATAGCCACAAATAATATAAAATACCTA
GGTGTGACTCTAACTAAGGAAGTGAAAGATCTCTATGACAAGAACTTCAA
GTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCC
CATGCTCATGGATCGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCA
AAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATT
CTTCAACGAATTAGAAAGGCCACCCGGCAGATTCATCTGGAATAACAAAA
AAACCTAGGATAGCAAAAAATCTTCTCAAGGATAAAAGAACCTCTGGTGG
AATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA
ATGCATGGTACTGGTATAGTGACAGAGAAGTAGACCATTGGAACAGAATT
GAAGACCCAGAGATGACCCCACACACCTATGGCCACTTGATCTTTGACAA
GGGAGCTAATACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGTT
GCTGGCACCACTGGCTGGGATCCTGTATAAGATTTCTAATTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_e03.b1 MSMg01no326_e03.b1 CHROMAT_FILE:
MSMg01no326_e03.b1 PHD_FILE: MSMg01no326_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:56 2005
         (588 letters)



>mm_chr5_7067065_7068050
          Length = 986

 Score =  951 bits (492), Expect = 0.0
 Identities = 557/580 (96%), Gaps = 4/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   ttcataatcaatgtccaataatataatccataaggaaatttttggagaaagtaatgtgaa 68
           |||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||
Sbjct: 633 ttcataatcaatgtacaata--ataatccataaggacatttttggagaaagtaatgtgaa 576

                                                                       
Query: 69  agtatttttacttcaataagttcaatttacttgttttactaaagtataattgacaaattt 128
           |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 575 agtaattttacttcaataagttcaatttacttgttttactaaagtctaaatgacaaattt 516

                                                                       
Query: 129 gatgattttaagtacttaatatgatttatacagatttggctttctatcattagcaaatta 188
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 515 gatgattttaattacttaatatgatttatacagatttggccttctatcattagcaaatta 456

                                                                       
Query: 189 gcaagcaaatacaaagtaaaaatctgtaatcttttcttcctggagtacttgaaagaatat 248
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 gcaagcaaatacaaagtaaaaatccgtaatcttttcttcctggagtacttgaaagaatat 396

                                                                       
Query: 249 tataatcacttctgtcctacttagatgtgagaagatcctacataaactgtttcttataac 308
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 395 gataatcacttctgtcctacttagatgtgagaagatcctacataaacagtttcttataac 336

                                                                       
Query: 309 atgtgctttcttagtgtggagagaactaagagaaaagtatctttcaacctcatacatcct 368
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acgtgctttcttagtgtggagagaactaagagaaaagtatctttcaacctcatacatcct 276

                                                                       
Query: 369 agataacctcaatgtagtagagaaagaagctaatgaccaacttctctatgccactcaaat 428
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agataatctcaatgtagtagagaaagaagctaatgaccaacttctctatgccactcaaat 216

                                                                       
Query: 429 tccactcaagagagagaacatccttactgctctgcatctgcaagaaagctcaagtccaag 488
           |||||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 215 tccactc--gagaaagaacatccttactgctctgcatctgcaagaatgctcaagtccaag 158

                                                                       
Query: 489 tggatcaaggcactccacataaaaccagataccctgaaaggaccctgataaagctgtctt 548
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 157 tggatcaaggcactctacataaaaccagataccctgaaaggaccctgatatagctgtctt 98

                                                   
Query: 549 gtgcgaggctagggcagtgcctggtaaatacagaagtgga 588
           || |||||||||| |||||||||| |||||||||||||||
Sbjct: 97  gttcgaggctaggccagtgcctggcaaatacagaagtgga 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 986
Length adjustment: 10
Effective length of query: 578
Effective length of database: 976
Effective search space:   564128
Effective search space used:   564128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)