BAC Information

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BAC

Clone NameMSMg01-326H09
Chromosome5 (Build37)
Map Location 140,149,293 - 140,149,766
singlet/doubletsinglet
Overlap genenone
Upstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209
Downstream geneLOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H09.T7 (MSMg01no326_h09.b1)MSMg01-326H09.TJ (MSMg01no326_h09.g1)
ACCAG444080AG444081
length717705
length of high quality
(start - end)
243 (65 - 307)480 (61 - 540)
definitionCHROMAT_FILE: MSMg01no326_h09.b1 PHD_FILE: MSMg01no326_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:10 2005CHROMAT_FILE: MSMg01no326_h09.g1 PHD_FILE: MSMg01no326_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCAGAGCGGAGGCGCGGAATTCAAGGC
TTGCCGAAAAACTCATCCTGTCTCAAGATAGTAAAGAGAGGGCTGAAGAT
GTAGCTCAGTAGTAGAGTTCCTACCTAGAATTTCCCCAGAGAGGAGCAAG
GAACATGGCTCCACAATAGATCACGTGCCCAGACTCCCCCAGTGAAGGGC
TGGAGGGATTGATCAGTAATAGAGCCTTTGCTTAGTTGGTCAAGCATCTG
GGTTCAAACTCCATCATAGTGGGTGGTGGAGGTGACCAAACAGGGCTCCA
AAGCTTCAGTCATTTGCACGGAGGGGGAGAGACATACATGGCGAATATAT
TATCCTTCTCTGCCTTGGAGGTAGCTTTCCAAGGTTCTAGAATAATTCTA
TTGCCCCCCGAGGGCCTCTGTTCCCTCGTCTGTGAAATGAGCAAACAATA
AGATGACCCAAGGTTTCTATGATTGCCTCAGTCCTAAGCAAATGTAAACT
TCTGAGCCATGATCCCAGCCCCACTTTGGGGGATTCTAGGCAGGGCTCCT
GGAGCCATGCCCCAGCCCCTCCATATCTCCTAGAGGGGAAAAAGTACATC
TGCATTTAGACTGATCATCTTGACTGAGGCCATGATAGTGTTCTTTCATG
ACAGGCAAAATAATGACCTCCTCCTCCTCTTCTTCCCCTCTTCTTCCTCT
TTCTCGTCCTCCTTTTT
GGCGGCCGCCTGTTCAACAAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGGAACCTCAGTTTTATGTCTCTCTTCTGCTTTCTGTCCC
CTGCCCCACCTCACCAACTTCCAAAGTCACTTGCAAATTGTCCTCCAAGC
ACAGCAGGCAGGGTCAGCCCAGCTCCACTGTTCCCCAGGCTTACGTCTCT
ATGGGAGACCCCAGTACAGCCCAGCCCCAACCCTGGCCACCAATAAACAG
AGGTGTGACATCGGAGCTGGGATGTGCAGCGTGTCCCCAGGGAACAGAAT
ATTGAAAAGCGCACCCAACTCCATAAGCCCTCGGCACTCCTCCCCTCAAG
GGTGGGATCCTGGGCCTCACCTGTCTCCGTCTCCCCTGCGTTCCCACCAA
AGATTTGTCTTTCTGATTACAGCAGCGATACACAGGATGCCGGAGAAGAA
AAGACCCAGAAGGGGAGAGATGTGTCAGGCAGGGTACCAGCAGCACAGAG
AGCTTCTCTGAGAAGCAGCCGATGCTGCAGGCCTGGAGAGGCTGAGGCCG
GGTGATGACAGTTTAAGAATAGTTGTGCTGCAAGCCCCATATGACATCTT
TCTGCACCAAGTAAATGAATCCCCAACTTTCCTCACGTTGGTGCACACCT
GTCTGGGCCAGACCATGTTCCGGTGCCAAGTATCCTTTTGATGTGTGAAC
ACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h09.g1 MSMg01no326_h09.g1 CHROMAT_FILE:
MSMg01no326_h09.g1 PHD_FILE: MSMg01no326_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:10 2005
         (480 letters)



>mm_chr5_140149093_140149966
          Length = 874

 Score =  839 bits (434), Expect = 0.0
 Identities = 466/480 (97%), Gaps = 6/480 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaacctcagttttatgtctctcttctgctttctgtcccctgccccacctcaccaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaacctcagttttatgtctctcttctgctttctgtcccctgccccacctcaccaactt 260

                                                                       
Query: 61  ccaaagtcacttgcaaattgtcctccaagcacagcaggcagggtcagcccagctccactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaagtcacttgcaaattgtcctccaagcacagcaggcagggtcagcccagctccactg 320

                                                                       
Query: 121 ttccccaggcttacgtctctatgggagaccccagtacagcccagccccaaccctggccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccccaggcttacgtctctatgggagaccccagtacagcccagccccaaccctggccac 380

                                                                       
Query: 181 caataaacagaggtgtgacatcggagctgggatgtgcagcgtgtccccagggaacagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataaacagaggtgtgacatcggagctgggatgtgcagcgtgtccccagggaacagaat 440

                                                                       
Query: 241 attgaaaagcgcacccaactccataagccctcggcactcctcccctcaagggtgggatcc 300
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgaaaagcgcacccaactccacaagccctcggcactcctcccctcaagggtgggatcc 500

                                                                       
Query: 301 tgggcctcacctgtctccgtctcccctgcgttcccaccaaagatttgtctttctgattac 360
            |||||||||||||||||      ||||||||||||  ||||||||||||||||||||||
Sbjct: 501 cgggcctcacctgtctcc------cctgcgttcccaggaaagatttgtctttctgattac 554

                                                                       
Query: 361 agcagcgatacacaggatgccggagaagaaaagacccagaaggggagagatgtgtcaggc 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agcagtgatacacaggatgccggagaagaaaagacccagaaggggagagatgtgtcaggc 614

                                                                       
Query: 421 agggtaccagcagcacagagagcttctctgagaagcagccgatgctgcaggcctggagag 480
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 615 agggtaccagcagcacagagagcttctctgagaagcagctgatgctgtaggcctggagag 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 874
Length adjustment: 10
Effective length of query: 470
Effective length of database: 864
Effective search space:   406080
Effective search space used:   406080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)