BAC Information

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BAC

Clone NameMSMg01-326M05
Chromosome5 (Build37)
Map Location 38,859,623 - 38,859,966
singlet/doubletsinglet
Overlap geneSlc2a9
Upstream geneStk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik
Downstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326M05.T7 (MSMg01no326_m05.b1)MSMg01-326M05.TJ (MSMg01no326_m05.g1)
ACCAG444297AG444298
length758757
length of high quality
(start - end)
373 (45 - 417)344 (72 - 415)
definitionCHROMAT_FILE: MSMg01no326_m05.b1 PHD_FILE: MSMg01no326_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:31 2005CHROMAT_FILE: MSMg01no326_m05.g1 PHD_FILE: MSMg01no326_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTACCTGGCCAGAGAGTTTCAAAAGTAGAAATACAAATGGCTAA
ATTCTTCAAAGTACACAATATCCTTAAGAAAATGCACACTAAACTAAAAC
TACTTTGGGTTTCCAACTCTCCCTAGTCAGAGTGGCTAGAGTGGTTACCT
AGAACGCAGGTGACAGCAGCTGCTGGTGAGACTGAGGAAAGACGAGTGCT
CACTCAGTGTTAGTGTCAGTGGGTTGTAAAGTGGTTCAGCCACTTGGGAA
ACCACGGTGACAGTTTCTCACAACCTAAACACTAGATCTGCTGTATAAGC
CAGGGGTAGAACTTTTAGCACATACCTGTGAGACTGCATCTTACTACAGA
GATGCTTGTACATCCACCCCCCCCGCTGCTAGGAATGAACTAGCTAGGAA
ATGGAATGAGCTTAAATGTCCATCAGATGGTAAGTCGTCAAGTTATAGTT
GTCAGGTCCAAAGGGTACCCCATTTCTCCCCAAAAGCGCAGGCCCACTCA
CTCAGTCCAAAATTGAGCCTAGGCACAGCCTAATCTGTACTATGGGAGGA
TTTCAAGTGGTTAGATAAAAGCTAGCATTCCTTAGTCATCTGTGAAATTA
ATTCCCATGTGCTAAAACGAGTCATTTTTTCTTAAGTCTGGTAGAAGGGA
TATATGCCCTTCTTTGATATATATCTGTGGCTGCATATCTTAGTCTATTG
CGCTCTAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCACATGGGAGACTCACACCTGAGAGT
AATTTGATAGGGAGACAGAGGGCCAGGAAACTTGTCTCACAACCACCAAA
ATTACCTTGCAAAAAATAAAACAAAAGAAGAGAAAGCCCTTTAGAAGCCT
TATATTTAACTTTTTTATCTGATCAGAACACATTTTCTGTGAATGCCTGC
TTTGGGTTGGGTCTTGTTCTAGTTGGTGACACTGCAGAAACATTAAGATC
AGAGAATCCGTGTCTTCACGGAGCTTAAATTTTAAAACAGGAAGAAAGAC
CAGAAGCAAGGGTATACTTACTATCTCAGGTGGTACTACAAGGGGAAATA
ATTTGAGCGAAGGACCACCACAGGTTTAGAGAGGTGCTGTCCCATATGAG
CAGGCCAGGGAAGGTGTTACTGAGGAAGACACAGTTGAGAAGAAACAGCA
GGTAATCCAAGGAGAAAACATGAGCTATTTGAAAAAGAGCCTTTCAGTCA
AAAACAGCTGAAACTGCTAAGGCCCTGTGGTTCCAGCATGTGCCACATCT
GAAGGATAGCACTAAGGGTCAAATGTATGGAAGAGACATCACCTTACGAT
GAAAACAGTGTTTGCTAGGAGCCAGACACCCTAGTCGAGGCGTCCCAGAC
ATCTGTTCTGCTTGGTTTTCTACGTGAGAAGTCCGGTCTCCTGAATCCCT
CCGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_m05.g1 MSMg01no326_m05.g1 CHROMAT_FILE:
MSMg01no326_m05.g1 PHD_FILE: MSMg01no326_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:31 2005
         (344 letters)



>mm_chr5_38859423_38860166
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcacatgggagactcacacctgagagtaatttgatagggagacagagggccaggaaac 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tttcacgtgggagactcacacctgagagtaatttgatagggagacagaggtccaggaaac 260

                                                                       
Query: 61  ttgtctcacaaccaccaaaattaccttgcaaaaaataaaacaaaagaagagaaagccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtctcacaaccaccaaaattaccttgcaaaaaataaaacaaaagaagagaaagccctt 320

                                                                       
Query: 121 tagaagccttatatttaacttttttatctgatcagaacacattttctgtgaatgcctgct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tagaagccttatatttaacttttttatctgatcaaaacacattttctgtgaatgcctgct 380

                                                                       
Query: 181 ttgggttgggtcttgttctagttggtgacactgcagaaacattaagatcagagaatccgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttgggttgggtcttgttctagttggtgacactgcagaaacattaagatcagacaatccgt 440

                                                                       
Query: 241 gtcttcacggagcttaaattttaaaacaggaagaaagaccagaagcaagggtatacttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttcacggagcttaaattttaaaacaggaagaaagaccagaagcaagggtatacttac 500

                                                       
Query: 301 tatctcaggtggtactacaaggggaaataatttgagcgaaggac 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatctcaggtggtactacaaggggaaataatttgagcgaaggac 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)