BAC Information

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BAC

Clone NameMSMg01-327A16
Chromosome5 (Build37)
Map Location 132,765,953 - 132,766,310
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327A16.T7 (MSMg01no327_a16.b1)MSMg01-327A16.TJ (MSMg01no327_a16.g1)
ACCAG444504AG444505
length801740
length of high quality
(start - end)
369 (40 - 408)649 (68 - 716)
definitionCHROMAT_FILE: MSMg01no327_a16.b1 PHD_FILE: MSMg01no327_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:51 2005CHROMAT_FILE: MSMg01no327_a16.g1 PHD_FILE: MSMg01no327_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAGAATCCGCGGAATTC
ACAGATAATTGCCATAACAAAGTCCCAAAAGTTGTCAATTGACCTCAAGT
GCCCTCTGACACAAAGGATGTGAGTTAATAAATAATATAAAAATTGTAAT
GCAATTTAATAGATTTCAACTCTGGTTCCTACAGGCTCTGCCTGATATTC
TTTTCTGCCAGCTGTACTAAGAGGGTCTTCGCCATTGCTGCCACTAACAA
TTCCAGCCCTCAGGAAATGCCAGGAAAATGGATGAGAGTGAGCCTGAGAC
TGACCTGAGCAATCAGGTATCATCCTTTCTCAAAACAAACAAAACACACA
CACACACACACACACACACACACACACACACACACACGCACGCACACACA
CACACACACACAAACACCCCCCCCTCTCAGGGGGAGAGAGAGAGAGATTT
CCTTTCTTTACTTTCCCTCCGACCCGCTTTTCCACATTTTTTTCCCCTAT
TTTTCCTTTTTCTTCTACTCTTTTCCTTCCCTCCTTTTTACCTTCACCTC
TTTCTTTTCCCCTTTTTTTTCCTTTTACCTCTCTTCCTTTCCTTTCTCCT
CCTTTTCCCCTTCACCTTTTCTACCTTCCTCTTCTTTTTTCCCCCTCCTT
CTATACTTTTCTTCATACCTACCTTCCTTTTGCCCTTTTCTTACTTTTTA
TATCCATTTCAGTCACCCACTNACCTTTTATTATTTTACATATTTACATT
ACCCCATTATTACATATTCTTTCCCCTCCCACTTATTTATTCACTATTCA
T
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACCCGCCTCTGTGTACTGGCTAGTTTTGTGTC
AACTTGACACAAGCTGGAGTTATCACAGAGAAATTTCCATTGAGGAAATG
CCTCCATGAGATTCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGG
GAAAGGTCCCTTGTGGGTGGGACCATCTCTGGGCTGACAGTCTTGGGTTC
TATAAGAAAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACA
TCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTC
CAGTCCTGACTTCCCTTGCTGATGAAAAGCAGTATGGAAGTGCAAGCCGA
ATAAACCCTTTCCCCCCCAACTTGCTTCTTGGTCATGATGTATGATGTTT
GTGCAGGAATAGAAACTCTGACTAAGAGACTCTGCCTCCCATATATATAT
ATATATATATATATATATTTTACATTTTAAATTACACTTTAATTTTTTAT
TTGAAACACTGTGTGTGTATATACGCACATGCTATCTGATGTAGGTGCTG
GGAACTGAACTTGAATCCTTTAGAAGAACAGTACAGGCTCTTAGCCTAAT
CAGCAATTGGTTTGGCCCCACTTATTATTCCTTTTTGGTCAGTATTACAT
TAGGACATCTTCTAAGATAATATCTACAGCGAANAGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_a16.b1 MSMg01no327_a16.b1 CHROMAT_FILE:
MSMg01no327_a16.b1 PHD_FILE: MSMg01no327_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:51 2005
         (369 letters)



>mm_chr5_132765749_132766517
          Length = 769

 Score =  619 bits (320), Expect = 0.0
 Identities = 348/358 (97%), Gaps = 2/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcacagataattgccataacaaagtcccaaaagttgtcaattgacctcaagtgcc 64
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcacagataaaggaaataacaaagtcccaaaagttgtcaattgacctcaagtgcc 264

                                                                       
Query: 65  ctctgacacaaaggatgtgagttaataaataatataaaaattgtaatgcaatttaataga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgacacaaaggatgtgagttaataaataatataaaaattgtaatgcaatttaataga 324

                                                                       
Query: 125 tttcaactctggttcctacaggctctgcctgatattcttttctgccagctgtactaagag 184
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 325 tttcaactctggttcctacaggctctgcctgatattcttttctgccaattgtactaagag 384

                                                                       
Query: 185 ggtcttcgccattgctgccactaacaattccagccctcaggaaatgccaggaaaatggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtcttcgccattgctgccactaacaattccagccctcaggaaatgccaggaaaatggat 444

                                                                       
Query: 245 gagagtgagcctgagactgacctgagcaatcaggtatcatcctttctcaaaacaaacaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagagtgagcctgagactgacctgagcaatcaggtatcatcctttctcaaaacaaacaaa 504

                                                                     
Query: 305 acacacacacacacaca--cacacacacacacacacacacacacacgcacgcacacac 360
           |||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||
Sbjct: 505 acacacacacacacacatgcacacacacacacacacacacacacacacacacacacac 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)