BAC Information

Click to search

BAC

Clone NameMSMg01-327G06
Chromosome5 (Build37)
Map Location 133,526,739 - 133,527,070
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327G06.T7 (MSMg01no327_g06.b1)MSMg01-327G06.TJ (MSMg01no327_g06.g1)
ACCAG444761AG444762
length753730
length of high quality
(start - end)
290 (82 - 371)332 (76 - 407)
definitionCHROMAT_FILE: MSMg01no327_g06.b1 PHD_FILE: MSMg01no327_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:17 2005CHROMAT_FILE: MSMg01no327_g06.g1 PHD_FILE: MSMg01no327_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCGAGTTGGGCGGA
ATTCTTCATCTTTTCCAGAGCTACTAAGAGCTGGCTCCCCGAGCCCATCC
AGCGATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTT
CTTCTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGCATTCC
TACCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTA
TGCTTATTTTGTGCACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCCG
CTTTACTTCTGATAGCTTGTCCTGAATTTCATCTAGAATCCGCCCTGCCT
TAACCACTTGATAACATGTGAAAAGGAACAAATGGGCTTCTAACACTAGA
TTACTTTCTAGGTTTTGTGTAAACAAACTCTTTTTCTGATATACTGTCTT
GAATTCCCTTATACCGTTCATGACCCCACTTATCCCTTATAGCTGTACTC
ACCGTCCACTCTCTGTCCCCAGCTGACATTTCCCGATTTCATATAGCTGA
ACCCCTTCTTATTAGCCTTGTTTTACCGTAACCTTCATTTATCGCGACTT
TTCTTCCTCCGTTCTGGTATTGAGGGAATTTTCTCCATGTGCCATTCTTT
TAGATTTTTTCTCGTCACCGGATCACTTACTATATAATTTGCTCTTAAAA
CGTCACCACTTCTTTAATTGATTTCTTCGCTCTGAATTTTCTTATGTCCT
CTN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAAAATTAACATTTAATTTTAAT
TAAATGTAAGGGTGGTCAATGTGGAGACAGTATTGCTTTCATATTTAGAT
ATTTTGTTAAAGTAGCAATGAACCAGGCTAAAGGTCTGAATGTATTTAAT
CTTGGATACTTTCTGGGAATCTCAAAATTTTTTGCAATGATTAGCTTTGT
CAACTTGACACAGTTTCAGATAACATAGAAAAAGTCTCCGTGAAGGATTA
TCTACATTAGATGGTCTTGGATGTATGTCTGTGAGAAGGGAAGATGAAGG
CATGGCCCACAGTGGGTGGTCCTGAACTGTCCAAGAGCAGAGAAATCAAA
CTGAACACTAACAAACATTTTTAAACAACCCCACACATTAATTTTTCTGT
GTGCTTGACTATAAATACCTGTGACTTGCTTCTTCCAGTTCCTGCTGCCT
TGACTTCTCCACAATGATGGGTCATAACCTGTAATTATCAGCTATATAAA
TACCTACTCCCCTGTGTTGCTTTTGTCCAGAGTATTTCTGCCCTTTTTAC
TCCACTCGATTTTCATATCCAGCTAGCTGCCTTGTTCGATTGCTATAAGC
CTCCAATCTTCCTTCATTTTTGTAGACTCTGTATTTCACCTCGCTTCCTT
TCTATGCCTGTCTCATTTCTCTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_g06.g1 MSMg01no327_g06.g1 CHROMAT_FILE:
MSMg01no327_g06.g1 PHD_FILE: MSMg01no327_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:17 2005
         (332 letters)



>mm_chr5_133526509_133527240
          Length = 732

 Score =  572 bits (296), Expect = e-168
 Identities = 323/332 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaaattaacatttaattttaattaaatgtaagggtggtcaatgtggagacagtattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agtaaaattaacatttaattttaattaaatgtaagggtggtcaatgtggagacagtattg 503

                                                                       
Query: 61  ctttcatatttagatattttgttaaagtagcaatgaaccaggctaaaggtctgaatgtat 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 ctttcatatttagatattttgttaaggtagcaatgaaccaggctaaaggtctgaatgtat 443

                                                                       
Query: 121 ttaatcttggatactttctgggaatctcaaaattttttgcaatgattagctttgtcaact 180
           | || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 442 tcaaccttggatactttctgggaatctcaagattctttgcaatgattagctttgtcaact 383

                                                                       
Query: 181 tgacacagtttcagataacatagaaaaagtctccgtgaaggattatctacattagatggt 240
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 382 tgacacagtttcagataacatagaaagagtctcagtgaaggattatctacattagatggt 323

                                                                       
Query: 241 cttggatgtatgtctgtgagaagggaagatgaaggcatggcccacagtgggtggtcctga 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttggatgtatgtctgtgagaagtgaagatgaaggcatggcccacagtgggtggtcctga 263

                                           
Query: 301 actgtccaagagcagagaaatcaaactgaaca 332
           ||||||||||||||||||||||||||| ||||
Sbjct: 262 actgtccaagagcagagaaatcaaactaaaca 231


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)