XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAAG
AGCCACAAACACAGAGATTTAATTAGCTTATGAGATTGTGTCTCCTAAGG
ATATCAGAAGCTATACTCAGAGAGTTTCAACATGACTGCTTCAACATGAG
TTGAACAAGGACAACAACACTAGACATTAAAATAGATAATGTAAAGCCCA
AGAAACATCAAAGATCATCAGACAATTATGAAATGCAGTGACAAGAAAAA
AAATTGTTGTCTTCAGTGAAGAATAATATATCAATAGGTTATCAATAGCA
AATCATTAGCCCTAAGAAGATACATAAGAGTAACAGTATACAGCCCGGTC
GGGCTATATTTAGGGCTATATTAGTAAATTCATATCTACACATTTAAGCA
ACAATTAAGAAAAAAACACCCACGAATCATCAGGGAGGAGTATATTTTTA
ACATGGAAATAGTGGTAATAGTCTTGCACTGTGCATTTCCTACACGGAAA
TAGTATATTTCAAACAATTAGGTTGATAAATTTTGGTATACCTATATTTT
ATCACCACCACAACAAGATAGGGTGGGAATATTATAAGAATCCAAGGAAC
AGGGAGTTAATTAGCTGTGAGATTGTGTCTCCAAAGGATGTCAGAAGCTA
AACCCAGAAAGTCTAATTAACTCCTTGTTCCTCTGGTTCTTAAAATTCCA
CCCCACTCCAAATAAATTGTTTTGATTGGTAGGATGTCTTTCACATGTTA
AATCTTTACTCATCT

GAGGCTGGGGCGCCTGGCGTTCCTTTAGGACCTATAAAGACCGTGCATTC
CCTTACACTTGCACGAAAGAATCTGCCTATTCCTACCTGTATAACAGCAT
TTTGACATGGAAAGAAAAGAGGTGTTACTATCATCAGTACGGGATTGCCC
TTAGCTGCTGAAGTAAAAAACCTTTGATCTGACTCTAAGAATTATCTTGT
TTCCTAAGAAACATTAATGAGGNNNCTTCCTTCCCGCTTCGCCCNTGTGA
AATCCTGGCTACATCGGTAATATTTCCNCTCGATCCCCAGACATTTCGAN
TTTTTCTGGGGAGCCGTGCCCCCCCNAATAAAAAGGCCTAAGGGTAGACC
CTATTAAAAAAAACCGCCGGCCCCTGTTTTTGAAAATAAAACCCCTCCAG
CCCGTTTTTTTTTTTGTCTTAAACTAAAAAAACCGGAATTTGGGGAAAAT
CGNTNTNNNTTNGAGGGGGGTGGGGGCTTTATGTTATCATGTGGGGGGGG
GGGGGGGGGCTNANNNNTTTTATAATTTTGGGTGGGTCCCCCNANNTATA
AATTTTTTGTTTTTTTGGTTCCTGCCCAGGAGNNTTTTTTTGTG

Query= MSMg01no327_o18.b1 MSMg01no327_o18.b1 CHROMAT_FILE:
MSMg01no327_o18.b1 PHD_FILE: MSMg01no327_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:55 2005
         (694 letters)



>mm_chr5_82694741_82695835
          Length = 1095

 Score = 1108 bits (573), Expect = 0.0
 Identities = 665/703 (94%), Gaps = 20/703 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtaagagccaca--aacacagagatttaattagcttatgagattgtgtctcc 61
           ||||||||||||||||||||  |  |||||||||||||||||||||||||| ||||||||
Sbjct: 202 ggaattctgtaagagccacagga--acagagatttaattagcttatgagatagtgtctcc 259

                                                                       
Query: 62  taaggatatcagaagctatactcagagagtttcaacatgactgcttcaacatgagttgaa 121
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaggatatcagaagctatacacagagagtttcaacatgactgcttcaacatgagttgaa 319

                                                                       
Query: 122 caaggacaacaacactagacattaaaatagataatgtaaagcccaagaaacatcaaagat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaggacaacaacactagacattaaaatagataatgtaaagcccaagaaacatcaaagat 379

                                                                       
Query: 182 catcagacaattatgaaatgcagtgacaagaaaaaaaattgttgtcttcagtgaagaata 241
           |||||    |||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 380 catca----attatgaaatgcagtgacaagaaaaaat-ttgttgtcttcagtgaagaata 434

                                                                       
Query: 242 atatatcaataggttat-caatagcaaatcattagccctaagaagatacataagagtaac 300
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atatataaataggttattcaatagcaaatcattagccctaagaagatacataagagtaac 494

                                                                       
Query: 301 agtatacagcccggtcgggctatatttagggctatattagtaaattcatatctacacatt 360
           ||||||||| | |||  |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 495 agtatacagacaggtttggctatatttagggctatattagtaaattcatatctacacata 554

                                                                       
Query: 361 taagcaacaattaagaaaaaaacacc-------cacgaatcatcagggaggagtatattt 413
           |||||||||||||||||||||| ||        || ||||||||||||||||||||||||
Sbjct: 555 taagcaacaattaagaaaaaaa-acaattaagtcatgaatcatcagggaggagtatattt 613

                                                                       
Query: 414 ttaacatggaaatagtggtaatagtcttgcactgtgcatttcctacacggaaatagtata 473
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 614 ttaacatggaaatagtggtaatagtcttgcactgtgcatttcctacacagaaatagtata 673

                                                                       
Query: 474 tttcaaa-caattaggttgataaattttggtatacctatattttatcaccaccacaacaa 532
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cttcaaaacaattaggttgataaattttggtatacctatattttatcaccaccacaacaa 733

                                                                       
Query: 533 gataggg-tgggaatattataagaatccaaggaacagggagttaattagctgtgagattg 591
           ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 734 gatagggatgggaatattgtaataatccaaggaacagggagttaattagctgtgagattg 793

                                                                       
Query: 592 tgtctccaaaggatgtcagaagctaaacccagaaagtctaattaactccttgttcctctg 651
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 794 tgtctccaaaggatgtcataagctaaacccagaaaatctaattaactccttgttcctctg 853

                                                      
Query: 652 gttcttaaaattccaccccactccaaataaattgttttgattg 694
           ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 854 gttcttaaaattccaccccactcaaaataaattgttttgattg 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space:   742140
Effective search space used:   742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)