Query= MSMg01no328_h15.b1 MSMg01no328_h15.b1 CHROMAT_FILE:
MSMg01no328_h15.b1 PHD_FILE: MSMg01no328_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:38 2005
(333 letters)
>mm_chr5_12585638_12586370
Length = 733
Score = 543 bits (281), Expect = e-159
Identities = 314/325 (96%), Gaps = 2/325 (0%)
Strand = Plus / Minus
Query: 6 gaattccattac-ttttcatctactttgtggctttctccttttttatggcaatataagtt 64
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattccattacattct-atctactttgtggctttctccttttttatggcaatataagtt 471
Query: 65 tttctcagagacagaatttacagctatcttgtctgtctccaaataattcccatctacaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttctcagagacagaatttacagctatcttgtctgtctccaaataattcccatctacaga 411
Query: 125 ttaggatacagtgtatatcatgtcacccttattattatatcaagatcttttaccatgctt 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 410 ttaggatacagtgtatatcatgtcacccttattattatattaagatcttttaccatgctt 351
Query: 185 cccaaagagcacaggaagtgtgtactaagttccattgtctgtactctagagcacaccatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cccaaagagcacaggaagtgtgtactaagttccattgtctgtactctagagcacaccatg 291
Query: 245 gggttctgtccatgatgctgtgctagagcaatcattattaaattggttaggatcattact 304
|||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||
Sbjct: 290 gggttctgtccatgatgctgtgcttgagcaatcaaaaggaaattggtgaggatcattact 231
Query: 305 accctctcacaaagcattactgcag 329
||||||||||| |||||||||||||
Sbjct: 230 accctctcacagagcattactgcag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_h15.g1 MSMg01no328_h15.g1 CHROMAT_FILE:
MSMg01no328_h15.g1 PHD_FILE: MSMg01no328_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:38 2005
(573 letters)
>mm_chr5_12425607_12426583
Length = 977
Score = 1031 bits (533), Expect = 0.0
Identities = 567/585 (96%), Gaps = 12/585 (2%)
Strand = Plus / Plus
Query: 1 tgtatcaatagtgttagtccaatcattgtagcctgttagcaatctgccctttacttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgtatcaatagtgttagtccaatcattgtagcctgttagcaatctgccctttacttttgg 252
Query: 61 ctcctccatagttaacactgttcatctgctaagtaacaaacttctccacatttttatccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctcctccatagttaacactgttcatctgctaagtaacaaacttctccacatttttatccc 312
Query: 121 catttaatgtcttaatactttctctaaaatttaagtggaaacattctcttgcatctttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 catttaatgtcttaatactttctctaaaatttaagtggaaacattctcttgcatctttgc 372
Query: 181 acaattttacatatagctcttactacaattttgatatgtgctttgcttactgtgtaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 373 acaattttacatatagctcttactacaattttgatatgtgctttgcttactgtgtgacct 432
Query: 241 ctatatctatatttacgggagaaatatggatggtgaattttgtttttatgttgtatttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctatatctatatttacgggagaaatatggatggtgaattttgtttttatgttgtatttaa 492
Query: 301 atatctaaaagagactgtgtatatatatat--------ttctaatgtaatatacatat-- 350
||||||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct: 493 atatctaaaagagacggtgtatatatatatatatatatttctaatgtaatatatatatat 552
Query: 351 --gtataaatgtatgcataatttttgaataaatttagaactaccagtacttctgtcattt 408
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 atgtataaatgtatgcataatttttgaataaatttagaactaccagtacttttgtcattt 612
Query: 409 agactatctctttctatgacagttttttcattaataacttttttcttgccaaatttatta 468
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 613 aaactatctctttctatgacagttttttcatttataacttttttcttgccaaatttatta 672
Query: 469 tgaagcccatatagaacttatgtctcataagcaacatgtttcgctttctgtatcccaaag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgaagcccatatagaacttatgtctcataagcaacatgtttcgctttctgtatcccaaag 732
Query: 529 tatatgacatattctcataagtaattcagttatatttttgttcag 573
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tatatgacatattctcataagtaattcagttatatttttgttcag 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 977
Length adjustment: 10
Effective length of query: 563
Effective length of database: 967
Effective search space: 544421
Effective search space used: 544421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
