BAC Information

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BAC

Clone NameMSMg01-328L03
Chromosome5 (Build37)
Map Location 20,866,189 - 20,866,512
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
Downstream geneFgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328L03.T7 (MSMg01no328_l03.b1)MSMg01-328L03.TJ (MSMg01no328_l03.g1)
ACCAG445727AG445728
length746743
length of high quality
(start - end)
367 (42 - 408)343 (74 - 416)
definitionCHROMAT_FILE: MSMg01no328_l03.b1 PHD_FILE: MSMg01no328_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:55 2005CHROMAT_FILE: MSMg01no328_l03.g1 PHD_FILE: MSMg01no328_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTTGTTCCTAAACATGCTCCAACCAGGTGAACCCTTTCATATTTTGG
TGTTAATGGGAATCTTCTTAGATTTTCTTAATTTGACTGGACAGTGGTGG
TGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT
CTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCTGG
GCTATACAGAGAAACCCTGTCTTGAAAACAACAACAAAATAAAAACAAAA
ACAAACAAACAAAAAGCAATTTCCTTAATTTGGGAAGTCCTGGCCATGTG
CCTACAGTTTACCATGCGGAATAGTCAGTTCTCAGTGGTTAGCATCTGTG
CCTCCACAGTAACACACCCCACCCAACAGATTCCCTTAGTTTCTTCAGTC
TCATAGATATGCCGTTTTACATACCAAACTCCTATTTTACAATGAGCCTG
TTGTTTCTTTTTGACGGGGGTGCTATTTGCAGACAGGATTCTATATTACA
TAGGCATATACTTTTGTCTCCCTTCCTTTCTTTAGATACAGCTGGCTTAG
TATCTATTCTCCCGCTCCCTACCTATATCACGTTTCATATCTCTTGGTCC
ATTAATTTAAACATTTAATACGACCCTTCTTTTATTTCTTTATCAGACGT
CCATTTTCCTTATACCTGGATAATATACTTATTTTTACATTTCCCG
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATATATCTTGGACATTAAACCTCT
ATCAGATTTGCAGTTGGTGAAAATCTTTTCCCATTCTGTAGGTTGTTGTT
TTAGTTTCATGAGGTCCTATTTATTAATAATCTAGTGCCTGAGCTATTGG
TGTTCTACTCAGGAAGTTGTCTCCTATGACAATGTGTTCAAGGCTATTCA
CTGCCACTTTCTCTTCTAACAGATTCGGTGTATCTAGTTTTATGTTGAGG
ATTTTGATCTACTTGGTCTTCGGTTTTGTGTAGGGTAATAAATATGGATC
TATTTACACTCTTCTACATGTAGACATCTAGTTAGACCATCATTTGTTGA
AGATACTTTCTTTTATCCCCCGCGTATTTATAAACTTTTTATGAAAATCA
AGTGTCCATAGGTGTGTGGATTTATGTCTGGGCCTTTGATTCAATTCCTT
TGATCAATCTGTTTGTTTTTATGCCAATATACCGTGCACTATTTTTCCTT
TTCTCATTTTGAACATTGGTTTGCGGTTTTCCTCTCTATTCCATCTTAAT
TGTCTCCCCATTGACCCATCCCCCCTTTTCCCCCTTTGTTCGCCTTCTTG
CCCTTCTTCCCCTTTTTTTTCTTTTTCCTCTTCCCCCTCTCCTTTTTTTT
TCCCCCGCCTTTCTTTCCCCCTTTTTTATTATTCCCCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_l03.b1 MSMg01no328_l03.b1 CHROMAT_FILE:
MSMg01no328_l03.b1 PHD_FILE: MSMg01no328_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:55 2005
         (367 letters)



>mm_chr5_20865746_20866512
          Length = 767

 Score =  574 bits (297), Expect = e-168
 Identities = 318/325 (97%), Gaps = 1/325 (0%)
 Strand = Plus / Minus

                                                                       
Query: 43  accctttcatattttggtgttaatgggaatcttcttagattttcttaatttgactggaca 102
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 accctttcatattttggtgttaatgggaatcttcttagattttcttaatttgactggaca 708

                                                                       
Query: 103 gtggtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctg 162
           ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 707 gtggtggtggcacacacctttaatcccagcacttgggaggcagagacaggtgg-tttctg 649

                                                                       
Query: 163 agtttgaggccagcctggtctacagagtgagttccaggacagcctgggctatacagagaa 222
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 648 tgtttgaggccagcctggtctacagagtgagttccaggacagcctgggcaatacagagaa 589

                                                                       
Query: 223 accctgtcttgaaaacaacaacaaaataaaaacaaaaacaaacaaacaaaaagcaatttc 282
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 588 accctgtcttgaaaacaacaacaaaacaaaaacaaaaacaaacaaacaaaaagcaatttc 529

                                                                       
Query: 283 cttaatttgggaagtcctggccatgtgcctacagtttaccatgcggaatagtcagttctc 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cttaatttgggaagtcctggccatgtgcctacagtttaccatgcggaatagtcagttctc 469

                                    
Query: 343 agtggttagcatctgtgcctccaca 367
           |||||||||||||||||||||||||
Sbjct: 468 agtggttagcatctgtgcctccaca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)