Query= MSMg01no328_m12.b1 MSMg01no328_m12.b1 CHROMAT_FILE:
MSMg01no328_m12.b1 PHD_FILE: MSMg01no328_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:01 2005
(440 letters)
>mm_chr5_27995372_27996216
Length = 845
Score = 690 bits (357), Expect = 0.0
Identities = 419/445 (94%), Gaps = 13/445 (2%)
Strand = Plus / Plus
Query: 5 gaattcaaacaatatcctcttagtacacttaaagcgaatccttctgatcgctattccttc 64
|||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcaaacaaaatgttcttagtacacttaaagtgaatccttctgatcgctattccttc 264
Query: 65 tattcctaagcaatcttcaagggtccctgtaaccacacctgagtgtcatcaggttccaga 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 tattcctaagcaatcttcaagggtccctataaccacacctgagtgtcatcaggttccaga 324
Query: 125 gagacagggttggactgacctacttagaatccgggctctgccaactctctctgtgactat 184
|||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct: 325 gagacaaggttggactgacctacttagaatctgggctctaccaactctctctgcgactat 384
Query: 185 gggcatgttggctaccctccccccaaatatgtcatgttctcattatgaaaactagggggg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 gggcatgttggctaccctccccccaaatatgtcatgttctcattatgaaaactaggggcg 444
Query: 245 tcagggtgatcaacctatgatgctgctgtgatgaccaatcagaacaaagtatgtgctatg 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 tcagggtgatcaacctatgatgctgctgtgaggaccaatcagaacaaagtatgtgctatg 504
Query: 305 cttaccatggcatctaatctatcagttatcataattgtcatc------cacagctcatga 358
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 cttaccatg-catctaatctatcagttatcataattgtcatcatgatccacagctcatga 563
Query: 359 ccagtgaagggct---cccaccccacttataactcagtgtgtgaaagttgaggctgggtg 415
||||||||||||| | | || |||||||||||||||||||||||||||||||||||
Sbjct: 564 ccagtgaagggcttgac--agcc-acttataactcagtgtgtgaaagttgaggctgggtt 620
Query: 416 gaggtggttaacctccatgacagca 440
|||||||||||||||||||||||||
Sbjct: 621 gaggtggttaacctccatgacagca 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 845
Length adjustment: 9
Effective length of query: 431
Effective length of database: 836
Effective search space: 360316
Effective search space used: 360316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_m12.g1 MSMg01no328_m12.g1 CHROMAT_FILE:
MSMg01no328_m12.g1 PHD_FILE: MSMg01no328_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:02 2005
(339 letters)
>mm_chr5_28162638_28163377
Length = 740
Score = 609 bits (315), Expect = e-179
Identities = 333/339 (98%), Gaps = 1/339 (0%)
Strand = Plus / Minus
Query: 1 tcttggcaatatccatttagtatctgttcctcctttgctagtttctgcaccaaaacaaga 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 539 tcttggcaatatcaatttagtatctgttcctcctttgatagtttctgcaccaaaacaaga 480
Query: 61 gtttgaggctgaagtggcagctagaggtggagtgttcacctagtgtgaggctcttgggtc 120
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 479 gtttgaggctgaagtggcagctagaggtggagtattcacccagtgtgaggctcttgggtc 420
Query: 121 cctgcactaccccttacc-aaagtctcaaattccagccttacctagctgaagtaaatgga 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cctgcactaccccttaccaaaagtctcaaattccagccttacctagctgaagtaaatgga 360
Query: 180 gaaatacagagcatgagctggggtgctacattgtttatctgttagatgtcaccaggagtg 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaaatacagaccatgagctggggtgctacattgtttatctgttagatgtcaccaggagtg 300
Query: 240 gacagaggactccaagggtttgatttttacgagatgaatgaaagattccagaagacacaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gacagaggactccaagggtttgatttttacgagatgaatgaaagattccagaagacacaa 240
Query: 300 ctagacaaaaatggcccattgatttgggggcactgtcgg 338
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctagacaaaaatggcccattgatttgggggcactgtcgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space: 241230
Effective search space used: 241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
