XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGATTTAACAGCGTCACACTCTTACAATATGTAAGCTGAGTCGTTTGCTC
TCATTATTTTAGAAGAATTGATTCCTTCTTGCCATTAAAAGAATCACTCT
TTTTTTTTTTTAACAGTGCTTATCTGTTTCCACTGATGCCTGAGACAAAC
CCCACTGATTATTCAGACCTTGAAGACTTCTCAAAGCCATCCTCCTAGGG
CTGCCCCACACTAGTGACTCTTTCAGAGTTCCAGGTCTGGGTTGGACTGG
TCAGCACCACCCCTCAGTCCGCAGGCTTGCAGAATCCAGGGGCTCACATG
GCATGTTTCAGCATCATTTCTCTTCACTCCCTGTGGAGCTCACAATGGAG
ACAGCCAACAACAGGACTACTACTCTTAATTACCTAGAAGTTAAAATGTG
CTATTTAATCTATTAATCTATTGAAAATATTTCTGAATTCAATAAATCTC
TTTTATTTAACCTATAAATCTATGACCTTCCATGATTGTATGCAGACATG
AATATGAAAAAAAATCTGTTTTAAGTTTTTTTCTCATAAAAGATCATGCC
TGTTAAAAGAAAACACCCCCCCCCCCTCAGGGAACCACATGGAAGGGGAG
GCAGAAAGAGTGTAAGAGCCCGAGGGGATGGAGAACTCCAGAAGAACAAA
GGTCTCTAAATCAACTGAGCAATGTTCCTA

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAA
TGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTC
AGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGC
TTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATA
GTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCT
GCACTAAACCTGTCTGGTCCTGGGCTTTTTTTGGCTGGTATACTATTACT
AACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTATATGGTCAACTT
TGATCCTGATTCTTTTTTGGTACCCGCTTTCCTGCCCTGAACTTTGTTCC
CTTCTTCCCCGTTTTTTCGTTTTGTTGAAACATTTCCTTTTGTTTAACCC
CTCCGCACGTTCCCTTTGGTCTTCTTTCCCTTTTTN

Query= MSMg01no328_p03.b1 MSMg01no328_p03.b1 CHROMAT_FILE:
MSMg01no328_p03.b1 PHD_FILE: MSMg01no328_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:14 2005
         (602 letters)



>mm_chr5_8692231_8693228
          Length = 998

 Score = 1098 bits (568), Expect = 0.0
 Identities = 590/598 (98%), Gaps = 4/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgatttaacagcgtcacactcttacaatatgtaagctgagtcgtttgctctcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattctgatttaacagcgtcacactcttacaatatgtaagctgagtcgtttgctctcat 739

                                                                       
Query: 65  tattttagaagaattgattccttcttgccattaaaagaatcactcttttttttttttaac 124
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 738 tattttagaagaattgattccttcttgccattaaaagaatcactc-ttttttttttaaac 680

                                                                       
Query: 125 agtgcttatctgtttccactgatgcctgagacaaaccccactgattattcagaccttgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agtgcttatctgtttccactgatgcctgagacaaaccccactgattattcagaccttgaa 620

                                                                       
Query: 185 gacttctcaaagccatcctcctagggctgccccacactagtgactctttcagagttccag 244
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 gacttctcaaagccatcatcctagggctgcccaacactagtgactctttcagagttccag 560

                                                                       
Query: 245 gtctgggttggactggtcagcaccacccctcagtccgcaggcttgcagaatccaggggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtctgggttggactggtcagcaccacccctcagtccgcaggcttgcagaatccaggggct 500

                                                                       
Query: 305 cacatggcatgtttcagcatcatttctcttcactccctgtggagctcacaatggagacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cacatggcatgtttcagcatcatttctcttcactccctgtggagctcacaatggagacag 440

                                                                       
Query: 365 ccaacaacaggactactactcttaattacctagaagttaaaatgtgctatttaatctatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccaacaacaggactactactcttaattacctagaagttaaaatgtgctatttaatctatt 380

                                                                       
Query: 425 aatctattgaaaatatttctgaattcaataaatctcttttatttaacctataaatctatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatctattgaaaatatttctgaattcaataaatctcttttatttaacctataaatctatg 320

                                                                       
Query: 485 accttccatgattgtatgcagacatgaatatgaaaaaaaatctgttttaagtttttttct 544
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 319 accttccatgattgtatgcagacatgaatatg--aaaaaatctgttttaagtttttttct 262

                                                                     
Query: 545 cataaaagatcatgcctgttaaaagaaaacaccccccccccctcagggaaccacatgg 602
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 261 cataaaagatcatgcctgttaaaagaaaaca-cccccgcccctcagggaaccacatgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 998
Length adjustment: 10
Effective length of query: 592
Effective length of database: 988
Effective search space:   584896
Effective search space used:   584896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)