BAC Information

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BAC

Clone NameMSMg01-329C04
Chromosome5 (Build37)
Map Location 152,507,886 - 152,508,475
singlet/doubletsinglet
Overlap genenone
Upstream geneAprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329C04.T7 (MSMg01no329_c04.b1)MSMg01-329C04.TJ (MSMg01no329_c04.g1)
ACCAG446049AG446050
length726719
length of high quality
(start - end)
539 (46 - 584)590 (77 - 666)
definitionCHROMAT_FILE: MSMg01no329_c04.b1 PHD_FILE: MSMg01no329_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:29 2005CHROMAT_FILE: MSMg01no329_c04.g1 PHD_FILE: MSMg01no329_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCCCTACAGGTCGACTCTTCTACCCCTGCGTGGGATATGAGT
CATCCCCAGAGCTCGGGCTTTCTCCGAATAAAGCCTCATGTGGTTTGCAA
CAAGCTCGGTCTGTCGTGAGTTCTTGGGTTTCCGCTATTGTCCTGAGGCC
TGAGCGAGGGGCTCCTCTTGGAGTCTTTCAGTTCCACATGCAGACTTCCA
GTTAGACCAGCACCATTTGTCAAAGATGCTTTCATTTATTCCACTCTATG
GTTTTGACTTCTTTGTCAAAGATCATAAGTATGTGGGTTATGATTGGATA
TAAAATTCTATTCCATTGATCTACCTGTCTGACTTTGTACCAGTACCATG
TAGTTTTTATTACTATTTCCCTGTAGTATATCTTAATGTCAGAGATTGTG
ATTTCCCCCAAAAGTTTTTATTGTTGAGAATTTATTTGCTATCATGCTTT
TTTCTTAACCATATTATGTTGAGAACTGCTCTTTCCATATCTTGGAAGAA
TTATGTTAAATTTTTGATGGAGATTGTATTGAATCTGTAGATTGCTTTTG
GTAAGGTATGCATTTTTACTATGTTAATCTCACAGATCCGTGAGCATGGG
TTATTTTTCTCTCCTCTGAGGGCTTTGTCAATTTCTCTCTTCCGAGACTT
GAAATTCCTATCATATATATCTTTCG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGGAAATAGTGAGAATTATCT
CACTATTAATTTTCTGTTAGTAGTGTGAAGTGGCCTTTAACCAGGACATT
GTCAAAGAGACATGGGCTGTAGGCATATTCTGTTGGCAGTTTATTTGCAC
CTGAAGATAGTTTTCTATAGCCCTACAAAGATGTGTGACTTTGGCTAGTT
CCAGTTTTAAATTAACACTTGTGATTTGAGCAGAAACACAGTAAAAGGAA
ATTCTGAAAAATGGAAGATATTAACTAAAAATGCTAAAGAGAAATCCAGA
GAATAAAGCTTGGAAAAAGGAGAAAAAAAGTCATGACATCTTTCACTGTA
TCATTCAGTGGCCATAATTTGGCCACCACAAAGGGCTGTTATAGAAAATG
GTAGTGGAAACAGTGAGGTCATTTGCCCACTCACATTTATAATTTAAGAT
TGTTTCTAAAAGTGTGTTATTCAAAGTCTAGTCCAGCAAAATGTCCTATG
ACTCAGTCCAATGGATTTTTATGACATTCCCTGCGAAGTTCTTTGAGCAA
TAATTGCCTTTGCTACTAAGAATGCTCTTTTGAAGGTCAGCCAGAGTTCT
CACTGTTCATCTGGAATATAAGAATTTGACTTTAAGCTTTGTGACCACCA
CCAAACAAGAGCTATCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_c04.g1 MSMg01no329_c04.g1 CHROMAT_FILE:
MSMg01no329_c04.g1 PHD_FILE: MSMg01no329_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:29 2005
         (590 letters)



>mm_chr5_152507686_152508675
          Length = 990

 Score = 1125 bits (582), Expect = 0.0
 Identities = 588/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaggaaatagtgagaattatctcactattaattttctgttagtagtgtgaagtggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aaaaggaaatagtgagaattatctcactattaattttctgttagtagtgtgaagtggcct 731

                                                                       
Query: 61  ttaaccaggacattgtcaaagagacatgggctgtaggcatattctgttggcagtttattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttaaccaggacattgtcaaagagacatgggctgtaggcatattctgttggcagtttattt 671

                                                                       
Query: 121 gcacctgaagatagttttctatagccctacaaagatgtgtgactttggctagttccagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcacctgaagatagttttctatagccctacaaagatgtgtgactttggctagttccagtt 611

                                                                       
Query: 181 ttaaattaacacttgtgatttgagcagaaacacagtaaaaggaaattctgaaaaatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaaattaacacttgtgatttgagcagaaacacagtaaaaggaaattctgaaaaatggaa 551

                                                                       
Query: 241 gatattaactaaaaatgctaaagagaaatccagagaataaagcttggaaaaaggagaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gatattaactaaaaatgctaaagagaaatccagagaataaagcttggaaaaaggagaaaa 491

                                                                       
Query: 301 aaagtcatgacatctttcactgtatcattcagtggccataatttggccaccacaaagggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaagtcatgacatctttcactgtatcattcagtggccataatttggccaccacaaagggc 431

                                                                       
Query: 361 tgttatagaaaatggtagtggaaacagtgaggtcatttgcccactcacatttataattta 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgttatagaagatggtagtggaaacagtgaggtcatttgcccactcacatttataattta 371

                                                                       
Query: 421 agattgtttctaaaagtgtgttattcaaagtctagtccagcaaaatgtcctatgactcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agattgtttctaaaagtgtgttattcaaagtctagtccagcaaaatgtcctatgactcag 311

                                                                       
Query: 481 tccaatggatttttatgacattccctgcgaagttctttgagcaataattgcctttgctac 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 310 tccaatggatttttatgacattccctgggaagttctttgagcaataattgcctttgctac 251

                                                             
Query: 541 taagaatgctcttttgaaggtcagccagagttctcactgttcatctggaa 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taagaatgctcttttgaaggtcagccagagttctcactgttcatctggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)