BAC Information

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BAC

Clone NameMSMg01-329F04
Chromosome5 (Build37)
Map Location 99,942,581 - 99,942,795
singlet/doubletsinglet
Overlap geneA930011G23Rik
Upstream gene1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b
Downstream geneLOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329F04.T7 (MSMg01no329_f04.b1)MSMg01-329F04.TJ (MSMg01no329_f04.g1)
ACCAG446187AG446188
length757842
length of high quality
(start - end)
219 (46 - 264)138 (77 - 214)
definitionCHROMAT_FILE: MSMg01no329_f04.b1 PHD_FILE: MSMg01no329_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:44 2005CHROMAT_FILE: MSMg01no329_f04.g1 PHD_FILE: MSMg01no329_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATTTTCAGAAGATCCGCGGAATTCATAAAGTTTCCGGGGAAGG
GAAAGGAAATCCAATGGACAGGCCCAGGCGTTATCAGAATTGGTCAGGCT
TAATCCAGAAATTGATTTTCAGCATGTTTAGGGGAGCAGAAAAGACATAC
ATCCTGGGGCCAGTCTCCACAGAGGCTGTTTCATTACCATTTGATGAGAT
CTAAGAGGTGTGTGTTCAAAAGCCTGTCTCTTCAAGAACATACCTGATGT
TGCCAGATGCTAATGAGCACAGGATTATACAACCCACGGAGACACACTTA
TAGACTACTGTGGAACTGTTTGTGCAAGCTATTTACAACCTTAAGATGTG
AACACCAGAAAGCTCATCGTGTGTGCGTGTGTGCGTGCGTGTGTGTCCCG
CCAGCCCTATAATATTCATTGTACACACACCCCTTTCATCTGTTCCTGGT
CCGCATTTTTCCTTTTTATCCTTCCGTTCCCAGATCCCTCCTTACCTGTA
CTCCCTTGACCTTCTCCTCTTCTTCGTACTATTGCTTTTTTTCTCCCTTT
CTTTTTTTCTCCCCACCTTTTCTTTTTTGTTATTCCCTTTTCCCCCACTC
CTTGCCTTTCCTCCCCCGTTTTTCCTTTGACCCTTCTCCTCCGTTTTTTT
TTTTTTTTTTCCACCCTACTCCTGCTTTCCTTGCCATACTCCTCCGCTCC
CTTTTCCGTTTCACCCTTTCTTTTTCCCTCCTTTTTGTCCATTTTCCACT
CGTTTTT
CCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTCTAACTGGGCTGCCTTGT
CTGGCCTCAGTAGGACAGGATATGCCTCACCCTGAAGAGACTTGATATAC
CAGGGTGGGGGATACCTAGGAGGCCCTAGCCTCTCAGAAGGGGAGGAGGG
AGTGGGGGGAGGGCGTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTGTT
TCTTCTTTCCCCTTTCTCTTTTCCTCTCATTTTCTTTTCACCCATTTTTC
TATATATCTTCGTCAATTCATTCCTGTCTCCCCTCTTCTCTTTCTTCTTT
TTCTCCTCCCTCGTTCTCCATCTTCCCGTTTCTCTCCCCCCTTTTTTTAT
TTTTTTTTTTTTATTTTTTTTCTTTTCTCCTTTCTTTTTTTTTTCCCTTT
TCTCCTTTTTCCCTTTTTTTCCTATTTTTCACTATTATCTCTTCTCACTC
AGCTTCCCACCCCTGTTTTTTCTGCCTTTTTACTCTTCCCCCTCTTCCCC
CTTTTTCCGTCCCCCTTTTTTTTCTTCTCCCACTTTATGTGTTCCTTTCT
TTTCTTTACTCTTTTTTTCTATTTCGCTAGCCCCGACTCTATTTTTTCGT
CCCTCTTTTTTTTTTTTACCCGTCTTATTTTCTTTCGCCCCTCTCGTCTC
GTTGTCATTTTACGCCCTAGTTTATCCTTTTTTGTTTTCCCATTTTTTCC
CTCTTCTTGACCTATCTTTGTCCACTCGTGTCCCCTTTTTTCCTTTCTTT
TTTCTCTCTTTCTATTTTACCTATCCACTGCGCACTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_f04.b1 MSMg01no329_f04.b1 CHROMAT_FILE:
MSMg01no329_f04.b1 PHD_FILE: MSMg01no329_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:44 2005
         (219 letters)



>mm_chr5_99942381_99942999
          Length = 619

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagggaaaggaaatccaatggacaggcccaggcgttatcagaattggtcaggcttaatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gaagggaaaggaaatccaatggacaggcccaggcgttatcagaattggtcagacttaatc 260

                                                                       
Query: 61  cagaaattgattttcagcatgtttaggggagcagaaaagacatacatcctggggccagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaattgattttcagcatgtttaggggagcagaaaagacatacatcctggggccagtc 320

                                                                       
Query: 121 tccacagaggctgtttcattaccatttgatgagatctaagaggtgtgtgttcaaaagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacagaggctgtttcattaccatttgatgagatctaagaggtgtgtgttcaaaagcct 380

                                              
Query: 181 gtctcttcaagaacatacctgatgttgccagatgc 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctcttcaagaacatacctgatgttgccagatgc 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)