BAC Information

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BAC

Clone NameMSMg01-329G05
Chromosome5 (Build37)
Map Location 61,181,074 - 61,181,285
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneLOC666597, EG666610, LOC100041524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329G05.T7 (MSMg01no329_g05.b1)MSMg01-329G05.TJ (MSMg01no329_g05.g1)
ACCAG446236AG446237
length766799
length of high quality
(start - end)
355 (45 - 399)225 (75 - 299)
definitionCHROMAT_FILE: MSMg01no329_g05.b1 PHD_FILE: MSMg01no329_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:49 2005CHROMAT_FILE: MSMg01no329_g05.g1 PHD_FILE: MSMg01no329_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTACCGTAGCCCATGAGACATTGGAGTTCTGTTTAGGAAATTTCC
CCTTGACAATGAGTTCAAGTCTCTTTCCCACTTTCTTTTCTATTGGATTC
AGTGTATCTGGTTTTATGTTGAGTGTGGGGAATTGCAGGCTGGTCTCTAG
TCAAGCTGAGGTCTGAAGCCTGATGGTCATAATTCAGCTACATGACAAGG
TAGGCGTTCCCTCATGCTCCTGGAACTTCAGCCCCTGCCTAAGGTACCAC
CTCCCACAGCCCCCACAACAGAAGCAGGGTCAGTAGAGATGTAAGCAATG
GCCCAAGCTTCTGACCTTCAGGCTAAACTCCTCCCCAGTTACCTAGCAAC
AGTGAAGACCATAAAAAGCAACGCTCAGCCCCTCGCTCTCTTATTCCTTT
GTCCTCTCACCTCTTCTCTCACTTCTCTCTCCTCTTCCCTCTTTGTCTCC
TCTCCTCTCCTCTCCTCTCCTCTCCTCACCTCTCCTCTTCTCTTCTTTCC
TCTTCTTTTTTTTTGTCTTCATATCTTTCTCTCTATACTATTTTTGTATA
TATATATATTCTTATTTTCTTATCCGTTTAATTCTCTTTTTTCCTTCCTC
CTTTCTACACAAATTCTATAGCCTATGTTTATCTTGTCGTGTCATAGCCC
TTCTCTATTCTATTACGTTTAATTTCGTGGTATTGGCTAATTTTTTTTTA
TCATTTGTCACTCATN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGATTTGTTTTTCTTACTTGGTGA
GATGTTATTTGATTTTTTTTTTCTGTACTTCTGGGTCACATCTAATTGAA
ATTGTAAAATTTTATTATTTAAACTCTTTATTCTGTTTTTCATTTCTTTA
AAAAAATAAGTTGTTGGCTTTTAAATCTCTGTATGTGTGCGTGCAAGTGC
AAATGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
ATTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTNTTNTTTTTNNTTTTT
TTTTTTTTTNTTTTTTTTTTCCCTTTCTTTTTTTTTTCTTTTTTTTATTT
TCTACCTCTTTGTGGGGGCCCCCCCCTGTTGNAAANAGTCTAATTTAATC
CCTGCTCTAACTTCACATTACACATTTTCTTTTATCAATTTTTTCCAAAT
CTTTTCTTACTTATACATTTATTTTACCTCATTCTCACATCTCTCCTCCT
ACTGTTTATAACTATATATACCTTATCTACGCCTTATTTATTCACCCACT
TTTCTATACCCTTTTCTTTATTTCATACCTATCATCTTACTCGTCCCATA
TCATTCTCTAACACTTTCAATTCACTCTTAACTTATCTATCTTCTTTCAT
TTACTATCCTCTTTTTTTCCCTCTCTTACATCTTTTATTCACCCACCCTT
CCTAACATATACACACTAACTTACTTCTTAATTCCTTCCCATTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_g05.g1 MSMg01no329_g05.g1 CHROMAT_FILE:
MSMg01no329_g05.g1 PHD_FILE: MSMg01no329_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:49 2005
         (225 letters)



>mm_chr5_61180874_61181497
          Length = 624

 Score =  397 bits (205), Expect = e-115
 Identities = 211/213 (99%), Gaps = 1/213 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggatttgtttttcttacttggtgagatgttatttgattttttttttctgtacttctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgggatttgtttttcttacttggtgagatgttatttgattttttttt-ctgtacttctgg 259

                                                                       
Query: 61  gtcacatctaattgaaattgtaaaattttattatttaaactctttattctgtttttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtcacatctaattgaaattgtaaaattttattatttaaactctttattctgtttttcatt 319

                                                                       
Query: 121 tctttaaaaaaataagttgttggcttttaaatctctgtatgtgtgcgtgcaagtgcaaat 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 tctttaaaaaaataagttgttggcttttaaatctttgtatgtgtgcgtgcaagtgcaaat 379

                                            
Query: 181 gtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 624
Length adjustment: 9
Effective length of query: 216
Effective length of database: 615
Effective search space:   132840
Effective search space used:   132840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)