BAC Information

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BAC

Clone NameMSMg01-329H18
Chromosome5 (Build37)
Map Location 45,180,299 - 45,180,604
singlet/doubletsinglet
Overlap geneLdb2
Upstream geneBst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329H18.T7 (MSMg01no329_h18.b1)MSMg01-329H18.TJ (MSMg01no329_h18.g1)
ACCAG446308AG446309
length746789
length of high quality
(start - end)
331 (42 - 372)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no329_h18.b1 PHD_FILE: MSMg01no329_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:57 2005CHROMAT_FILE: MSMg01no329_h18.g1 PHD_FILE: MSMg01no329_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCACTATATTCTCCTGAGGGGTATCCACTGTGAAATTTGGGGGAAGGT
CAACACAATGTGGCAATGTTGTCATGAGTACAATGGACCTATTCTCTCTG
TCCAGTGAGACTGCGTAGAACAGCTTGTGGCATCCCTGATCACGGTGTGA
GTCTTTACTGTGTGAAGAACTAAACCATAAAGTACCCTAATGTTTTGGTG
AAAAGGCTATTTTTAGTCTAGCCACATAGAGTATACTATTGGTCTCCTGG
TGCTGACCCAGCTCCTTTGGAGTAATCCTCAGAGGTTGCATGTTAAGAGA
TATTCCTTCTCAGAATAAATGGTCAGTCAAGGCCAGCAGAGCAGTGCTCT
CCAGCCCTCTTTGGCCCCCCCGCTTATACAGTCCCACATAGGCAGCGATG
ATGAGGATCATTCCTATGTCCGTTGTCTCCTCTGAGTCCTCATATGCAGT
AATCCTACTCTCGGCTTCTTCCCAATACTATGGAGCGCACCTGACCTCCT
ATATTGGTCCTGCCCTTTCTTCTCATTCCGCCGTTTTTTTTTTTTTTTTG
ACCTTTTGCCCCGTCCATCCTCTCCCTCCCTTTTTACTATTCACCTTTCC
CCCTTTTTTTTTTTTTTCCCCCCCCCTTTTTTCTTCCGTACTTCCCCTCA
AATTAACTTCCCATTTTCTTTCTTATTTTTTCTTTCCATAATCTAT
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTTTCTTTTGCCTT
GCATAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTA
CAGTACAAGCCATTGCTGTTTTGTTATTGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGAAGTTCCCCCCCCCCCCTTATATTTTGACTCATTTTCCGGT
GATTCGTATGTTATCGATTCTCATTCTTCTTTTCGCTACCTTCTGGTTAC
GCTTTTCACCATCTGTTGACCAGTTTGTCTCCTCCTTTTTTGTATCGCTC
TTAGGTCCCTTTGTACCGTTAGTTTTCGTATTTTACGGGCCGCGTGAAAT
TTTTTTTGTCCTTTTTTTTTACTCCTTTTTAGCTATTTACCATTTTATCT
TTTTTCATTCTCCGTCTTTTATACTTTTTTTTTTCCCTATTTTTCTNTCC
TTTGTTCTTTTCATTATACCCCCTTCACCACTTTAAATCCTTCTCCGACC
TCTTCTTATTTTTTATCTTTACTTCTCTTTTTTCATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_h18.b1 MSMg01no329_h18.b1 CHROMAT_FILE:
MSMg01no329_h18.b1 PHD_FILE: MSMg01no329_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:57 2005
         (331 letters)



>mm_chr5_45180074_45180804
          Length = 731

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 26  tgaggggtatccactgtgaaatttgggggaaggtcaacacaatgtggcaatgttgtcatg 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgaggggtatccactgtgaaatttgggggaaggtcaacacaatgtggcaatgttgtcatg 285

                                                                       
Query: 86  agtacaatggacctattctctctgtccagtgagactgcgtagaacagcttgtggcatccc 145
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agtacaatggacctaatccctctgtccagtgagactgcgtagaacagcttgtggcatccc 345

                                                                       
Query: 146 tgatcacggtgtgagtctttactgtgtgaagaactaaaccataaagtaccctaatgtttt 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgatcacggtgtgagtctttactgtgtgaagaactaaaccataaagtaccctaatgtttt 405

                                                                       
Query: 206 ggtgaaaaggctatttttagtctagccacatagagtatactattggtctcctggtgctga 265
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 406 ggtgaaaaggctatttttagtctagccacatagagtgtactattggcctcctggtgctga 465

                                                                       
Query: 266 cccagctcctttggagtaatcctcagaggttgcatgttaagagatattccttctcagaat 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cccagctcctttggagtaatcctcagaggttgcatgttaagagatattccttctcagaat 525

                 
Query: 326 aaatgg 331
           ||||||
Sbjct: 526 aaatgg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)