Query= MSMg01no329_j05.b1 MSMg01no329_j05.b1 CHROMAT_FILE:
MSMg01no329_j05.b1 PHD_FILE: MSMg01no329_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:05 2005
(486 letters)
>mm_chr5_131561253_131562138
Length = 886
Score = 658 bits (340), Expect = 0.0
Identities = 436/492 (88%), Gaps = 48/492 (9%)
Strand = Plus / Minus
Query: 4 ggaattcactgctggctggtaggtcatgaactaaaacttagcgctcggtagggatggatc 63
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 532 ggaattcactgctggctggtaggtcatgaactaaaacttagtgctcggtagggat----- 478
Query: 64 tgggatctgggaggtgggccattttacctgtcgtgtccgtcccc-c---gtccccccacc 119
||||||||||||||||||||||||||||| | | ||||| | |
Sbjct: 477 --ggatctgggaggtgggccattttacctgt--t-t---tcccctctggg---------- 436
Query: 120 cccacccccagccactgaaagaatggaaaagagatgtttggtgagaaggccactgagaaa 179
||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 435 ----------gccactggaagaatggaaaagagatgtttggtgagaaggtcactgagaaa 386
Query: 180 gcaagagagtaaatcactggctggctttctagacactgttattgttatcatgaatatact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaagagagtaaatcactggctggctttctagacactgttattgttatcatgaatatact 326
Query: 240 tttctccttgctgtgtaacaaagtacctgacaaaggcaacttttagaagaaaaaagaaaa 299
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tttctccttgc--tgtaacaaagtacctggcaaaggcaacttttagaagaaaaaagaaaa 268
Query: 300 aaacaacgttacctcctgatttgagggtgcacagtccatcacagcaggggaaggcttgac 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 a---aacgttacctcctgatttgagggtgcacagtccatcacagcaggggaaggcttgac 211
Query: 360 agcaggagggtgagacagttggttacattgtgtctacagtcaggaa--acagagagatgg 417
|||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||
Sbjct: 210 agcaggagggtgagacagttggttacattgtgtccacagtcgggaagcagagagagatgg 151
Query: 418 atgctggtgctcagctttctcctttttattcagtccaggcctccag-cct---gtagggt 473
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 150 atgctggtgctcagctttctcctttttattcagtccaggactccagcccttaggtagggt 91
Query: 474 tgtgccacttca 485
||||||||||||
Sbjct: 90 tgtgccacttca 79
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_j05.g1 MSMg01no329_j05.g1 CHROMAT_FILE:
MSMg01no329_j05.g1 PHD_FILE: MSMg01no329_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:05 2005
(655 letters)
>mm_chr5_131395578_131396632
Length = 1055
Score = 915 bits (473), Expect = 0.0
Identities = 613/665 (92%), Gaps = 12/665 (1%)
Strand = Plus / Plus
Query: 1 cttgtgcttgcaaggcaagtactttactgcctgagccatgtccctagctcactgtggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cttgtgcttgcaaggcaagtactttactgcctgagccatgtccctagctcactgtggact 252
Query: 61 ctttttttt--aagagttattattttataaatataattacataattatataaataaaatt 118
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cttttttttttaag--ttattattttataaatataattacataattatataaataaaatt 310
Query: 119 atacaatctataactatgttataaatacggactagttttataatttataaatataaattt 178
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atataatctataactattttataaatacggactagttttataatttataaatataaattt 370
Query: 179 cgatcgagctggactgtgtggggcacatgtacatgtaagtgcagtacctgcagaggccgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cgatcgagctggactgtgtggggcacatgtacatgtaagtgcagtacctgcagaggccgg 430
Query: 239 aagagggcatcaaatgtcctgggtctggggttacaggcacttgtgagcaatctgacttaa 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagagggcatcaaatgccctgggtctggggttacaggcacttgtgagcaatctgacttaa 490
Query: 299 gtgctgggaaacagtctgaggtcctccagcaaagcagcaaacacttccaaccacagagca 358
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 491 gtgctgggaaacagtcttaggtcctccagcaaagcagcaagcacttccaaccacagagca 550
Query: 359 acctctctagccccgccccctcttgggtatttgccttacgatgaataactaactatcata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acctctctagccccgccccctcttgggtatttgccttacgatgaataactaactatcata 610
Query: 419 cttcgggcaggccaccttcatagttataggaaataaataaataaataaataaataaataa 478
|||||||||| |||||||||||||||||||||| ||| ||| | | | | | | | | |
Sbjct: 611 cttcgggcagaccaccttcatagttataggaaagaaagaaagagagagagagagagagag 670
Query: 479 ataaataaataaataaataaataaataaataaata-a-------ataaagagcatgcagt 530
| | | | | | | | | | | | | | | | | | | | ||||| ||||||||
Sbjct: 671 agagagagagagagagagagagagagagagagagagagagagagagaaagaacatgcagt 730
Query: 531 tccaaaccaaaacatatgaatggcattttcttttcagcttcgagcttcgaactgcgaacg 590
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct: 731 tccaaaccaaaacatatgaacgacattttcttttcagcttcgagcttcgaactgtgaacg 790
Query: 591 ccagcggcaccctaggtttgtcgccagcgagcaggaatgagttaaaggctcagttcttgt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ccagcggcaccctaggtttgtcgccagcgagcaggaatgagttaaaggctcagttcttgt 850
Query: 651 attgc 655
|||||
Sbjct: 851 attgc 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
