BAC Information

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BAC

Clone NameMSMg01-330A13
Chromosome5 (Build37)
Map Location 135,338,384 - 135,338,547
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
Downstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330A13.T7 (MSMg01no330_a13.b1)MSMg01-330A13.TJ (MSMg01no330_a13.g1)
ACCAG446697AG446698
length770832
length of high quality
(start - end)
164 (128 - 291)195 (178 - 372)
definitionCHROMAT_FILE: MSMg01no330_a13.b1 PHD_FILE: MSMg01no330_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:41 2005CHROMAT_FILE: MSMg01no330_a13.g1 PHD_FILE: MSMg01no330_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAAATACGCGGAATT
CAAAGGAGATTTTCCATAAACAGAAATGATGGTCTGACACTAGGGTTGGC
TCAGGTCTCTATGCCAGCTGACCAATTAGAAACGAAGAGTCTCAGCCACT
TTCAGTCCCAGGTCTCCACATCACCACTTGGGACTATGTCTTTCCATCCA
CTGGGGGAGTCTAGGTTCCTGCTCATAATGGAGATTCCAGGAAGAGGCTG
GTGTCAGGGCATGGCAGTATAAAAGGGGGCTCACGGAAGACAAATATGTG
GTGTGGGGGTGGGGTGTCAGTTCTATTTGTCTCAGTGTCCTGGCTCCCTT
TCCATCCCTGTTTANGTAGTTTCCCCCACCATCCCCTCCCTCTTATCCAC
GCCCCAGCCTATGCTGCCTGGTTCTCAGAAAAAAAAAAAAGTTTATGGGG
GCATGTTCCCTCCCCGGCCAACTTGGAGGTCACTTTCAGACATTGCTCTC
GTGACTGAACACCCCCTGCATTGAAGAGAACTGAACTAGATCTGATGCCT
CCAAACCAGTCCGTCTCAATCCCGCTAATCCTTGATTGCAACGAGATGCC
TATAATGCTTCCCGCTTTTTCATGTGCCTATGTATTGTACCTAATATAAC
GGGTGCTTAATTATCGTAGCCTCTTTGTCTTGGCACATTTATCTTCTCGT
CAATCGTCCCAATGCAGCCTAGCGACCAATATCGCTCGTTTCTATCAAAT
CTTAATGTATTATATTCCTG
TATTTTTCTTCTTTTTCTCCCTTCTCTTCCATCTNTNTNTNNNNTCTCTA
TGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATAGGCAGGGGCTCTACCACTGAGTCACG
CCCCCAGCCCTTCATTGGTTGATCCCAGGCAGGGGCTCTACCACTGAGCC
ATGTCTTCAAGCCCTTTGCTTGGGAATCTCAGGCAGGCACTCATCTTTCT
TTGGATTATTCTTTTCTGAGTCAGGCTCTCGCTCTTTAGGCCATGCTACC
TTTGAACCTGAGATTCTCCTGCCTCAGCCTTTGAAAAGCTGGCTTCCAGG
TGTGGTCTGCCATTCTAGGCAGTCTTACCAGTTTTACCGATGAGAAGGTT
GAGGTAAGGAAGGTTTTTAATTTAACCGCCCCCCACCACGTCCTAAGGGC
AGGAAAGGCCCCAGTGGCTGCTCTTCCAGGAAAAAAAAAAGCGTTTCCCT
GGTAAAGTCTGTTGACTAGGGCCAAGAGCAGCTGGCACAGAACCTGAGAG
GAAGCTGTGGGTGACCAGGGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTG
AGTGTGCGTGTGTGAGTTGAGATATACCGAAGAATAGCAATTTTCATATA
TATATATTATCTTTTTTTTACCTTTGATTTAAATAAACTGTTTTCAACAC
ATATAAAATTTACTCTCTGGATTGTCTCTTCGTTTTGATAAAAAATTGAT
TTTATTTTATTTTATTAAGTTCTATTATTCTATATATTCTATAGAGATAT
CCTAATACATATTATTACTAAACAATCATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_a13.b1 MSMg01no330_a13.b1 CHROMAT_FILE:
MSMg01no330_a13.b1 PHD_FILE: MSMg01no330_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:41 2005
         (164 letters)



>mm_chr5_135338184_135338747
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaacgaagagtctcagccactttcagtcccaggtctccacatcaccacttgggactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agaaacgaagagtctcagccactttcagtcccaggtctccacatcaccacttgggactat 305

                                                                       
Query: 61  gtctttccatccactgggggagtctaggttcctgctcataatggagattccaggaagagg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 304 gtctttccatccactgggggagtctaggttcctgctcaaaatggagattccaggaagagg 245

                                                       
Query: 121 ctggtgtcagggcatggcagtataaaagggggctcacggaagac 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctggtgtcagggcatggcagtataaaagggggctcacggaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)