BAC Information

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BAC

Clone NameMSMg01-330G05
Chromosome5 (Build37)
Map Location 62,791,187 - 62,791,469
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream geneCentd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330G05.T7 (MSMg01no330_g05.b1)MSMg01-330G05.TJ (MSMg01no330_g05.g1)
ACCAG446960AG446961
length769831
length of high quality
(start - end)
236 (125 - 360)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no330_g05.b1 PHD_FILE: MSMg01no330_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:05 2005CHROMAT_FILE: MSMg01no330_g05.g1 PHD_FILE: MSMg01no330_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCATTTTTTAATGAGGTTATTTGAATATCTG
AAGTCCACCTTCTTGTATTTCTCTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATGCTCTATCTTACCGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAATTTTCTTTGTCTCCGCCCCCACGCGAAGTTCTTTGATCCA
TTTAGATTTGACCTCACACAAGGAAATAAGTATGGATCGATTTGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACTC
TAGGTGTGTGGGTTCATTTTTTGGGCTTCAATTCTATTTCCATTTGTCTA
CTTGTCTGTCTCTATCCAGTACCATGCAGTTTTTACCTCTATTTGCTCTG
TATTTAACCTTTTCGTCACGCATGTTTGATCTTCTCGTAGTTTTTTTCCT
CCTTGAAAAGAATTTTTTGCTATCCCAATGCTTCTCGGCAATTCCCGATT
TATTTTGTACTATTGTTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAAGTTAGACTCCAGAGAACCA
AATAATCCTATTAAAAATGGGGTACACCACTAAACAAAGAATTTTCAACT
GAGGAATACTGAATGGCTGAGAAGCACATGAAGAGACTTCTTAATAACCC
AAAGCTGTTTTTACTCAAGGCCCAGGACTAGGAACTCTAAATTCTAAGAA
CTGCCAAAAGTAAAAGCTACTAATATTAAGAAAGCTGTGCTTTTTTGGTG
TTGTTGTTGCTGTTATTGCTTGTGTGTGTGTATGTGTGTGTGTGTGTGTG
TGTGTGTGTGAGTTTTTGATAATTTCCCCAAACCATCCCCCCTTATTTTT
TTTTATGATTTTTGTTCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAATTC
GTTTTGTGGGGCGGCTTCTAATTCTTCTCTTTTTTTATTTTTCTATCTGT
TTCACATTACTTTCCTTACTATCTGTTAGACAATTTTCAATTATAACCTA
CATCCCACTCTTTTTCTATCCTTAATTCTTTTCTTCTTATACCTACTAAA
ATCTAAATATAACTCTTCCATAACTCCTATAAAAAATATACCTTACTATA
TCTATATTTTCTTTTCTCCTTTTCTTATTACTTCTATAATTTTTCTTCTA
CTCCATTCTCTTTCTAATTTCTTCTTACTATTATTACATAGGGTTTTATC
ATAAAGGTTAAATGTATTTTTTACTAGTATCTCCATCTCACTTTCCCTCT
TCTCATTTCTCTTCTTACAAGTAATTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_g05.g1 MSMg01no330_g05.g1 CHROMAT_FILE:
MSMg01no330_g05.g1 PHD_FILE: MSMg01no330_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:05 2005
         (281 letters)



>mm_chr5_62790914_62791596
          Length = 683

 Score =  468 bits (242), Expect = e-136
 Identities = 273/284 (96%), Gaps = 4/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataagttagactccagagaaccaaataatcctattaaaaatggggtacacca-ctaaac 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||
Sbjct: 556 aataagttagactccagagaaccaaataatcctattaaaaatggggtaca-gagctaaac 498

                                                                       
Query: 60  aaagaattttcaactgaggaatactgaatggctgagaagcacatgaagagacttcttaat 119
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagaattctcaactgaggaatactgaatggctgagaagcacatgaagagacttcttaat 438

                                                                       
Query: 120 aacccaaagctgtttttactcaaggcccaggactaggaactctaaattctaagaactgcc 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacccaaagctgttgttactcaaggcccaggactaggaactctaaattctaagaactgcc 378

                                                                       
Query: 180 aaaagtaaaagctactaatattaagaaagctgtgctttt--ttggtgttgttgttgctgt 237
           |||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||
Sbjct: 377 aaaagtaagagctactaatattaagaaagctgtgctttttgttgttgttgttgttgctgt 318

                                                       
Query: 238 tattgcttgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt 281
           |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 317 tattgcttgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgt 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 683
Length adjustment: 9
Effective length of query: 272
Effective length of database: 674
Effective search space:   183328
Effective search space used:   183328
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)