BAC Information

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BAC

Clone NameMSMg01-330I16
Chromosome5 (Build37)
Map Location 39,295,882 - 39,296,166
singlet/doubletsinglet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330I16.T7 (MSMg01no330_i16.b1)MSMg01-330I16.TJ (MSMg01no330_i16.g1)
ACCAG447070AG447071
length754754
length of high quality
(start - end)
236 (129 - 364)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no330_i16.b1 PHD_FILE: MSMg01no330_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:16 2005CHROMAT_FILE: MSMg01no330_i16.g1 PHD_FILE: MSMg01no330_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTGCTCTGCTGCTTGGTCTTTTGCTTCATATGCATATGTAAG
TATGGATGTGTGTGTAAGTATGTACCTGTGAGTATGTATACATGTGTGTG
TGTGTAAGTATGTAATTGTGAGAATGCATGCAAGCTGGACCTGACTGGGT
TGAATAGAAATATATAAGTGAGCATGCGTGAATCTATATATGAACTAATG
TGAGCTTATGCATATTTGCGTATGTAAAAGTTTTTCCTTCTGTGAGTGTT
ATTTTCTTCTACTTATTCAGTATAATTTTATTGCTCCAAACTTCCTCCTT
GCCCCACAAGCTTTAGGTANCTGCCACACCCCCCCCCAGGGTTCTAGCAA
TTAATCCTTAATCTCCTGCTGTTTCAGGATGAAAAGATAAATGCCAGAGA
CTGCAGACTCTGGCTTCAGAGGAACACAGAAGGCAGGTCAGCTATAATAG
CATAAACTTAGTCTTAGATAAGTAAACTTTTTATTATTGTAAATAAACAC
TATGTATCTCATAAGACAAAGTCTTACCGCCGAATCTGTCTCACCTGGGC
CACCTCTGGATGTCTGGACAGGTGGTTTTTGGAGCGAAGTATGCACTGCT
CTCCTCTGGTGGTGCTGGGGGTAAGGGTTGGCACTTCTTGGGGAGAGTGA
TAGCAGGCCTGTGGGAATAGTCCATGTATAAAGAATGAGTTGGTCTGCAT
TCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGACACTTTGTTTTATGTTCT
CATATATGGTATTTTTAATATTTCACAATCATTTGGCAGTTATTCCTTGG
AAGAGAATGTTCCATGAATCAGTAGCATTAGGCTAAAAGGTCTTCCATGG
GATTAAAGATGCAAGTAAGAAAGCATGTGTTTTTGCTAAGAGAAATGGAT
TGTTCTTGGGCTCATAGTGGGCGCCACACCCTACTCAGCACAGAGGAAAG
TGCTGTGCATGTTCTCCGCTCCTGTTTTCTATGACATCAGGGAAGCTATG
TGAGAAAGGATATAGAGTCGNNTTCNAGACCTNAGACTTGGTTTGGTTAC
TAATACAACCTTAGCAGAGAGAAGAGAATATNTACCGAATTTTGCGTGTG
GATTAATCTTTAGGTTTCCCTCTCTTCTAAGAGCCTGGAGTCATAATTCC
AAGTTTGAGGTCATTTGTGAGACTAATTTACACCCTTAGGTTATAAATAT
TACTAATTTTCCATGCCATACCATGACCTTATACCTAAGAGAGCATTTTC
TAATAGCAGCGGGCACCTAATTTCAATGCATTAAATAATCTCCCCTATCT
TTCAATTTCAGAATGTTCTCTTATCAAATTATTCACTGTGGCTTTTACAG
AGCAGGTAATATGTGAAGGGGACCCTTGAGCATGCAAAAATGTTGATAAG
ATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_i16.g1 MSMg01no330_i16.g1 CHROMAT_FILE:
MSMg01no330_i16.g1 PHD_FILE: MSMg01no330_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:16 2005
         (288 letters)



>mm_chr5_39295682_39296369
          Length = 688

 Score =  482 bits (249), Expect = e-140
 Identities = 276/289 (95%), Gaps = 8/289 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagacactttgttttatgttctcatatatggtatttttaatatttcacaatcatttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 485 tctaagacactttgttttatgttctcatatatggtatttttaatatttcaaaatcatttg 426

                                                                       
Query: 61  gcagttattccttggaagagaatgttccatgaatcagtagcattaggctaaaaggtcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcagttattccttggaagagaatgttccatgaatcagtagcattaggctaaaaggtcttc 366

                                                                       
Query: 121 catgggattaaagatgcaagtaagaaagcatgtgtttttgctaagagaaatggattgttc 180
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catgggcttaaagacgcaagtaagaaagcatgtgtttttgctaagagaaatggattgttc 306

                                                                       
Query: 181 ttgggctcatagtgggcgccacaccctactcagcacagaggaaagtgctgtgcatgttct 240
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgggcttgtagtgggcgccacaccctactcagcacagaggaaagtgctgtgcatgttct 246

                                                            
Query: 241 ccgctcctg----ttttctatgacatcagggaagctatgtgagaaagga 285
           |||||||||        ||||||||||||||||||||||||||||||||
Sbjct: 245 ccgctcctggggc----ctatgacatcagggaagctatgtgagaaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)