BAC Information

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BAC

Clone NameMSMg01-330M05
Chromosome5 (Build37)
Map Location 77,386,824 - 77,387,110
singlet/doubletsinglet
Overlap genePaics
Upstream geneGabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998
Downstream geneSrp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330M05.T7 (MSMg01no330_m05.b1)MSMg01-330M05.TJ (MSMg01no330_m05.g1)
ACCAG447232AG447233
length779825
length of high quality
(start - end)
---287 (128 - 414)
definitionCHROMAT_FILE: MSMg01no330_m05.b1 PHD_FILE: MSMg01no330_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:32 2005CHROMAT_FILE: MSMg01no330_m05.g1 PHD_FILE: MSMg01no330_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTATTGCGGCGCTATACGATCCTATTTCGGCACCGCNNGGAANCCNNGCT
TTGCAACACGGGGGANAGGAAGGAAGGAAGGGAGGGAAGGGAAGGGATTT
TTGCCCGGGAGGAGGGGAGAGGGGGGGGGGGAGGGAAAACCAGGAAAGGA
GGGAGAGAACGCCAACAAGACAAGGCCCGGGCCCCAACGCCCCCCCCCCG
GCGCCCCCCCCCCCCCCNCCGCCCTTTTTTTTCCCCCCTCTCCCCTCTCT
CCCCTATCTCCCCGCCTCCCCCCCCCCCCCCCCCACCGCCCCCCCTTTTT
CCTGTTTTCGCCCCCCGCCCCCCGCCCCCCGCCCGGGCCCTTTTTTTTTT
TTTCCCCCCCCCCCCCCCCCGCACCCCCCTCTCCCCCCTCTCCCCCTCTC
CCCCTCCGGTCCCTTTTAGAGGTCAGCTCCTCTCGGGCCGCGCCCGTCTG
CTTCTCCTCCCCTTCCTCCCTCCTCCTCCCTTTCCCTCTCCCCCTCCCTC
CCACCTTTCCCACCCTTCGCGGGCGCCCCCCCTCCCCCCCTCCCGCCCTC
CCACTCTCTCCTTTTCTCCCCTCTTCCCGCGCCTCCGCTCCTTCTCTCCC
TTCCCTCCTCCCCTCTCTTCCTTCCCCCCCTCTTCCTTTGCTCTCCCCCT
CCCCCTCTCCCTCACGCGTCTTTCTTTTTTTTTTTTTTCTCGCTTTTCTC
CCCCCCCCTTCCGCCCGCCTCTCTTACCCTCTTCCTATCCCGCCCCCCAC
CCCCTCGTTCTTTTTGTCTTCTCTTCCTT
TTTGCTGGAAATAGCGTAGGGCGCCGCGGCGATAAACTAATACTTTNCCT
CACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCTGGAGTGCTGCACAGTT
GTGCTTTGTTCTGCCTATGGAGGACACCACGGAATTATAAGTCCTGCTTT
TGCTTGTAAACCCTGAGAAATATTTGAAGATAGCAGCTGTGCCCTCCTGT
CCTGTTCTAAGTGGAAGACCTTGTGAAAAACTGAAGGTTTTGTGTCCCAT
GGACCTAGAGTTACACACAGCTGCTGGTAAACAGCTGTGCAAATGCTGGG
AACCACACACAGCTTCTCCACAGAGATCTTAACTGCTTCCAGGCCTGGAG
TAGCACTAGAAGTTGTTAGTTTCTTTGCCNAACCATCCCCACTGTGGTTC
CAGTGTCAGGGAAGTAAGAGCATGTGCTTGCCATGAAAATGACTAGAGTA
GCTGCAGTTCCAGATGCCACCTGAGGGGAGACTTTCCCAGGGATGATCTG
AGCAGTTAAAGAAAAGGTACCTTCAAAATTTAGAGCTGTTCTGATTGATA
AGGTAGATCAACCGATAATAATTAATATGATGCTGAACTGTAAAACATGA
AAATTCTGTATACAGGGCATCTTTTAAAGGATAATTTATTGCCCCTTGGG
ATGACTTAATGCTGCCTTCTATACATTCCTAGAATAAAATTTGTGGGTGT
AGACACTTGAATTCCTGAATGAATAGGGCTTTGTAGTGTAAAAAATACCT
GAAATCTTAAGCCCTATTAACGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_m05.g1 MSMg01no330_m05.g1 CHROMAT_FILE:
MSMg01no330_m05.g1 PHD_FILE: MSMg01no330_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:33 2005
         (287 letters)



>mm_chr5_77386624_77387310
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccctggagtgctgcacagttgtgctttgttctgcctatggaggacaccacggaatta 60
           ||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||| 
Sbjct: 201 actccctggagcgctgcacagttgtgctttgttctgcctatggaggacagtacagaattg 260

                                                                       
Query: 61  taagtcctgcttttgcttgtaaaccctgagaaatatttgaagatagcagctgtgccctcc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtcctgcttttgcttgtaaactctgagaaatatttgaagatagcagctgtgccctcc 320

                                                                       
Query: 121 tgtcctgttctaagtggaagaccttgtgaaaaactgaaggttttgtgtcccatggaccta 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcctgttctaagtggaaggccttgtgaaaaactgaaggttttgtgtcccatggaccta 380

                                                                       
Query: 181 gagttacacacagctgctggtaaacagctgtgcaaatgctgggaaccacacacagcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttacacacagctgctggtaaacagctgtgcaaatgctgggaaccacacacagcttct 440

                                                          
Query: 241 ccacagagatcttaactgcttccaggcctggagtagcactagaagtt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacagagatcttaactgcttccaggcctggagtagcactagaagtt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)