BAC Information

Click to search

BAC

Clone NameMSMg01-330N21
Chromosome5 (Build37)
Map Location 85,826,914 - 85,827,230
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330N21.T7 (MSMg01no330_n21.b1)MSMg01-330N21.TJ (MSMg01no330_n21.g1)
ACCAG447309AG447310
length770742
length of high quality
(start - end)
320 (46 - 365)296 (436 - 731)
definitionCHROMAT_FILE: MSMg01no330_n21.b1 PHD_FILE: MSMg01no330_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:40 2005CHROMAT_FILE: MSMg01no330_n21.g1 PHD_FILE: MSMg01no330_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGCAAGAGGTAAGAATTTTGCAAAATCAACACTCCTGGTAAAGG
AATGCTGTTGTTGAACATTGTCTCTGCTGATGTTCTTTAAGCTGGTCTGA
GAAAGTCAAACTGTTGACATCAGTTAAGGGAGTTCAGTCCAGTTCCATGG
CACAGCATTGACTTGTTGAACACTTTCTCTCATCTAGGTTATGGTCCAAT
CTGAAATTTTTACCTTGTTGAAATCCATGGTAAATTCAGGATGACAAATT
TCCTGAGCCTTCATCCTTTCAGCACTTGAATGATTAACATGCTTATATAT
ATCAAAGCAGGAGTTNATCCTTTACCGCCCACCCCAGACAACAAGATGAA
AGAAATTATGAAATATAGATGAAGGTGAGGAGCAGAATAGATAGATGGTG
ATGATGGTAGATGGATGGATAGATAGATGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAATATATANTATGNATTATTATACATTAT
TTTTTTTTAAAGTTTTTTTTTTATCTTTCTTCTACCTCGACCATCTCTTT
CCTTCTCATCTCTTTAATTATACTTTTTACTTGATTTTCTTTTTTCTTTT
TTATCTCTCTTTTCCTATGTTTCGTATGTAGTCTATACTGTTCTTATGAA
AATATATCATTATGTCATTTATCGTTTCTCCATAGGTATTATCTTATTTT
CATATTATAATCATTACACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAAAAATAAAAGCCTGTAGAAAGTACAGGAGATCTTGA
GGTATTAGGAGAACTTGATACCGAAATGTTTCTTACAGTAAGATTAATCT
CTAGTTCAGGGGCACACTCTGGCCAATAGGGCTCAGAGAGGAAAATGAAG
TTGAAAGGGACACGAAGAAGCTCTGATTATGCTGTAAAATGTATCAATAG
AATTAAAACTGATATTAGCTGAAATACCCAACAAAGGGGAGATAGAACTT
GTAGAGACTATATCCAGTGGATTTTTTTGGCCCCTGGTTGAGGGGTGGGG
CCACCCATTACNCTAATTTCCTTACCCCCCAATTCTTCCTGTCAAAATGA
AATGCAAGGACAAAGAGTGGAGAAAAAAAAGAAAGAAAGGCCGTCCGGAG
TCTGCCCCACCTGGGTATCCATCCCATCTGCAGACACCAAACCAAGACAC
TATTGCTGATGCCAAGAAAAGCTTGCTGACAGGTGCCTGATATAGCTGTC
TCCTGAGAGGGTCTTCCAGAGCCTGACAAATACAGATGTGGATGCAAGAA
GTCAACCATTGGACTGAGCATGGGGATCCCAATGGAGGAGTTTGGGAAAT
GACTGAAGGAATTGAAGGGGTTTGCAATCTCATAGAAAGAACAACAATCT
CAACCAACCAGACACCTCAGAGCTCCCAGGGACTAAACCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_n21.b1 MSMg01no330_n21.b1 CHROMAT_FILE:
MSMg01no330_n21.b1 PHD_FILE: MSMg01no330_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:40 2005
         (320 letters)



>mm_chr5_85826710_85827431
          Length = 722

 Score =  571 bits (295), Expect = e-167
 Identities = 311/317 (98%), Gaps = 2/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgcaagaggtaagaattttgcaaaatcaacactcctggtaaaggaatgctgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcaagaggtaagaattttgcaaaatcaacactcctggtaaaggaatgctgtt 264

                                                                       
Query: 65  gttgaacattgtctctgctgatgttctttaagctggtctgagaaagtcaaactgttgaca 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 gttgaacattgtctctgctgatgttctttaagctggtctaagaaagtcaaactgttgaca 324

                                                                       
Query: 125 tcagttaagggagttcagtccagttccatggcacagcattgacttgttgaacactttctc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 tcagttaagggagttcagtccagttccatggcacagcattgacttgttgagcactttctc 384

                                                                       
Query: 185 tcatctaggttatggtccaatctgaaattttt--accttgttgaaatccatggtaaattc 242
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 385 tcatctaggttatggtccaatctgaaatttttttaccttgttgaaatccatggtaaattc 444

                                                                       
Query: 243 aggatgacaaatttcctgagccttcatcctttcagcacttgaatgattaacatgcttata 302
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 aggatgacaaatttcctgaaccttcatcctttcagcacttgaatgactaacatgcttata 504

                            
Query: 303 tatatcaaagcaggagt 319
           |||||||||||||||||
Sbjct: 505 tatatcaaagcaggagt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space:   221743
Effective search space used:   221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)