NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAAATCC
GCGGAATTCTCTTTATTAAACCTAGGGAGATGTCTCAGTGGGTAAACACA
TTTGCTGTGCATGAGGTCCTGTGTTTGAATTGAACACCCAAACCCATGGT
GATATAGTGTGCATCTATAATCCCAGTGTTCCTATGGTGAGATGAGAGGC
AGAGACAAGAGATGCCCAAAAGCCCACAAGCCCAGCTTCCCCTGAATGGA
CCCCTTGCAGCAAAGAAAAAAAACCCTTTATCCCCCCCATTAAACCCTTA
AAAAAGGGGGGGGAAAAACTTTGTAAACCCCCCCCCAAAACCCCCTTGGG
GGCCTTTTTTTTTAACCCCCTCTTTTACTCTTTTCTCTTTGAGGTAGTGG
AGGTGATACTTTTTCTTTTGTTGGGGGGGGGGATACCTCATATTTTTTTT
TTTTACGCCTACCAACAATATTCTTGTATTTTTTTCATACCCTTATTTTT
TTAATGTTTTGGACCCCCTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT
GATTTTTTGTTGTTTTTTTTTTCTTTTGACGCTCTTTTTTCACCTTTCTA
CCACATAATTTTTTCCTCCTTTTCAACCCTCCTATATGCGACCCCCCCCA
CCTCCCACTCCCTCCCTCACTTCTTATCTCTTGTGGTGTTGAGTGTTT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGCCTCTGCCTCCTGAGTGCT
GTGGTCAAACAAGTATGCCACCACCACTACCTCCCATCTTTTTTTGTTTT
GTTTTCTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCT
GGAACTCGGCTGGCCTTGAACTCAGAAATCCATCTGCCTCAGCCTCCTGA
GTGCTGGGATTAAAGGGGTGCGCCATCACACCTGGCCACCACCAGTCTTT
TTAAGGTTTATTTTTCACTCTTATTTATATTATGTTTTTCCTGCATATAT
GTCTGTGTGAGGGTGCCAGATCTTCCGAACTTTGAGTTACAGACATTGTG
AGTTGCCATGGAGATTCTGGCAATTGAACCTGGGTCCTCTGGAAGAGCAG
CCAGTGCTCTTAATAGCTGAGCTATCTTTCCAACCCAGGCTTTTTAATTC
TTGGTCAGATGTCATCCGTAGCTATGAACTTGGGATCCCTTGTACCTTAT
ACTTACAGCAGCCTTTTCTGCCACATACACGACTTTATCATGAAGTTGGG
GTGTGGCGGTGCTCTGTCACTGATGGGGAGGAGCTTGGTAGGCCTCACCC
CTCTTCCCATTAGAAGTTAAGGTTGGGCTAGAGAGTAAGAGCACTGACTG
CTCTTTCATAGGTTCTGAGTTCAATTCCCAGCAACCAC

Query= MSMg01no331_h16.g1 MSMg01no331_h16.g1 CHROMAT_FILE:
MSMg01no331_h16.g1 PHD_FILE: MSMg01no331_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:23 2005
         (663 letters)



>mm_chr5_34975129_34976191
          Length = 1063

 Score = 1259 bits (651), Expect = 0.0
 Identities = 660/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctgcctctgcctcctgagtgctgtggtcaaacaagtatgccaccaccactacctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctgcctctgcctcctgagtgctgtggtcaaacaagtatgccaccaccactacctccc 260

                                                                       
Query: 61  atctttttttgttttgttttctgtttttttgagacagggtttctctgtatagccctggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctttttttgttttgttttctgtttttttgagacagggtttctctgtatagccctggct 320

                                                                       
Query: 121 gtcctggaactcggctggccttgaactcagaaatccatctgcctcagcctcctgagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctggaactcggctggccttgaactcagaaatccatctgcctcagcctcctgagtgct 380

                                                                       
Query: 181 gggattaaaggggtgcgccatcacacctggccaccaccagtctttttaaggtttattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggattaaaggggtgcgccatcacacctggccaccaccagtctttttaaggtttattttt 440

                                                                       
Query: 241 cactcttatttatattatgtttttcctgcatatatgtctgtgtgagggtgccagatcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactcttatttatattatgtttttcctgcatatatgtctgtgtgagggtgccagatcttc 500

                                                                       
Query: 301 cgaactttgagttacagacattgtgagttgccatggagattctggcaattgaacctgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 cgaactttgagttacagacattgtgagttgccatggagattctgggaattgaacctgggt 560

                                                                       
Query: 361 cctctggaagagcagccagtgctcttaatagctgagctatctttccaacccaggcttttt 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 cctctggaagagcagccagtgctcttaacagctgagctatctttccaacccaggcttttt 620

                                                                       
Query: 421 aattcttggtcagatgtcatccgtagctatgaacttgggatcccttgtaccttatactta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattcttggtcagatgtcatccgtagctatgaacttgggatcccttgtaccttatactta 680

                                                                       
Query: 481 cagcagccttttctgccacatacacgactttatcatgaagttggggtgtggcggtgctct 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcagccttttctgccacatacacaactttatcatgaagttggggtgtggcggtgctct 740

                                                                       
Query: 541 gtcactgatggggaggagcttggtaggcctcacccctcttcccattagaagttaaggttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcactgatggggaggagcttggtaggcctcacccctcttcccattagaagttaaggttg 800

                                                                       
Query: 601 ggctagagagtaagagcactgactgctctttcataggttctgagttcaattcccagcaac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggctagagagtaagagcactgactgctctttcataggttctgagttcaattcccagcaac 860

              
Query: 661 cac 663
           |||
Sbjct: 861 cac 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)