BAC Information

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BAC

Clone NameMSMg01-331O14
Chromosome5 (Build37)
Map Location 27,962,302 - 28,128,267
singlet/doubletdoublet
Overlap geneDpp6, Paxip1
Upstream geneB930011P16Rik, Speer4b
Downstream geneHtr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331O14.T7 (MSMg01no331_o14.b1)MSMg01-331O14.TJ (MSMg01no331_o14.g1)
ACCAG448086AG448087
length734739
length of high quality
(start - end)
645 (67 - 711)537 (71 - 607)
definitionCHROMAT_FILE: MSMg01no331_o14.b1 PHD_FILE: MSMg01no331_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:54 2005CHROMAT_FILE: MSMg01no331_o14.g1 PHD_FILE: MSMg01no331_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,962,302 - 27,962,946)(28,127,731 - 28,128,267)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCACTGCGCGGAATTC
CAGTGAGTTTCTTTTAACCCTTTCTTCAGTGGAACTTGATGTCATGGTGC
CCATGGGAGAAAATGGAGGCAAACCAGGCTTGGAACCTGTGCTCTGTAAA
ACGATAACCTCTTCCTTTCTATTCCTATCCTGGTCTGGTTGTACCCCTTG
CCAGACAGGATTAGTTACCTTAAGCTTAGGTCTCCTAACCCTGAGCCCAG
GCAGCTTCCTAGAGCAGAGCCCCTGTGGCTCATCACCAGGCAGACCCCTC
CATGTGCACTGGCTGAGGAAGGCCAGTCATTTGCCTGATATTGTTAACTA
AAATGAAACATCTCAGGTTATTGCTACCTATCTTTCCTGAAGATCCCTCT
ATTCCATCATTCCCCTCTCAGCCAATCCCTGCCAAGCCTCCTGGGGCCTG
GTCTAGCCAATGTGCTGAATTAATACAGAAAGTCACCTGGAAAATTTCAG
CCATCTGTTTGAGTTAATTGGGAGTCTCGTTTAGTCAATTTGGTGATGCT
GCTTCCACAGGCTTGATTAACTTCAAGGACTATGAAAAATTAGCTATAGT
CAGGACATGAAGTTTGAATTCCAGCTTTCCAGTCTTCTGCTTGCTCAAAT
TTCTTAAGCTAAATGCAGTAACAACAACACAAATCTGTGATACGCAGATG
CCACTCACTATACCTACTGATTCTCTGTCACACT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAAATACCCTCATCTTCCGGATGGTCAAGCATTCCAA
AAGACCTCCTGAGTCCATGGATTATTTCAGAGAAGCACAGTGCTCCACAC
TGAGTACTTGGTCTGATAGGGTGGGCAACACCTGTTGGGTGTTATTTTTG
TTTATTTTACTTGCTGGTTTGTGACCTTGAAAATCTCAACTCGTTGACAG
CAAGCCAGTGCCCACCGGCCAAATCTGTTACTGTGCATAAAGCTTTATTG
GTCCAAAGTCTAGGCCATCTTTATCACAGCATCTAGGACTGTTGTCCCCT
GCTCTGAATATTTGAAAAGTCACTACAAGTGACTTCAGAACCTTGAGAGG
AAAGAAAAGAAAAGGCAAAAAAAGTCCACCGGACCCCTAAACTCTCTTAA
CTTATTTCCCAATCTACATAGTAAAATTCAGGAGCTGAAGAGATGGTTTG
GCAATTTAAAGTGCCTGGCACTGTTTCGGAGGATCCGAGTTTGGTTCCCA
GCACCCATACTGGGTAGTTCACTGCCATCTCTAACTCTAGCTCCAAGAGC
ACCACACTAAGCTGCACATACTGTGTCCATACACATAAATACAAAAAAAA
AAATCTTCAAGTTGAATTGCAGGCTGGCAAGATAGCTCATTACACACACT
TACTCACTCTATATAAATTATTAAATAAATAACCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_o14.b1 MSMg01no331_o14.b1 CHROMAT_FILE:
MSMg01no331_o14.b1 PHD_FILE: MSMg01no331_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:54 2005
         (645 letters)



>mm_chr5_27962102_27963146
          Length = 1045

 Score = 1185 bits (613), Expect = 0.0
 Identities = 637/645 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctttcttcagtggaacttgatgtcatggtgcccatgggagaaaatggaggcaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctttcttcagtggaacttgatgtcatggtgcccatgggagaaaatggaggcaaacca 260

                                                                       
Query: 61  ggcttggaacctgtgctctgtaaaacgataacctcttcctttctattcctatcctggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | 
Sbjct: 261 ggcttggaacctgtgctctgtaaaacgataacctcttcctttctattcctaccctggaca 320

                                                                       
Query: 121 ggttgtaccccttgccagacaggattagttaccttaagcttaggtctcctaaccctgagc 180
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ggttttaccccttgccagacaggattaggtaccttaagcttaggtctcctaaccctgagc 380

                                                                       
Query: 181 ccaggcagcttcctagagcagagcccctgtggctcatcaccaggcagacccctccatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggcagcttcctagagcagagcccctgtggctcatcaccaggcagacccctccatgtg 440

                                                                       
Query: 241 cactggctgaggaaggccagtcatttgcctgatattgttaactaaaatgaaacatctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactggctgaggaaggccagtcatttgcctgatattgttaactaaaatgaaacatctcag 500

                                                                       
Query: 301 gttattgctacctatctttcctgaagatccctctattccatcattcccctctcagccaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttattgctacctatctttcctgaagatccctctattccatcattcccctctcagccaat 560

                                                                       
Query: 361 ccctgccaagcctcctggggcctggtctagccaatgtgctgaattaatacagaaagtcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgccaagcctcctggggcctggtctagccaatgtgctgaattaatacagaaagtcac 620

                                                                       
Query: 421 ctggaaaatttcagccatctgtttgagttaattgggagtctcgtttagtcaatttggtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggaaaatttcagccatctgtttgagttaattgggagtctcgtttagtcaatttggtga 680

                                                                       
Query: 481 tgctgcttccacaggcttgattaacttcaaggactatgaaaaattagctatagtcaggac 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 tgctgcttccacaggcttgattaacttcaaggacaatgaaaaattagctatagtcaggac 740

                                                                       
Query: 541 atgaagtttgaattccagctttccagtcttctgcttgctcaaatttcttaagctaaatgc 600
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaagtttgaattccggctttcaagtcttctgcttgctcaaatttcttaagctaaatgc 800

                                                        
Query: 601 agtaacaacaacacaaatctgtgatacgcagatgccactcactat 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtaacaacaacacaaatctgtgatacgcagatgccactcactat 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no331_o14.g1 MSMg01no331_o14.g1 CHROMAT_FILE:
MSMg01no331_o14.g1 PHD_FILE: MSMg01no331_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:54 2005
         (537 letters)



>mm_chr5_28127658_28128594
          Length = 937

 Score =  946 bits (489), Expect = 0.0
 Identities = 525/537 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcatcttccggatggtcaagcattccaaaagacctcctgagtccatggattatttcag 60
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 610 cctcatcttctggatggtcaagcattccaaaagacctcccgagtccatggattatttcag 551

                                                                       
Query: 61  agaagcacagtgctccacactgagtacttggtctgatagggtgggcaacacctgttgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agaagcacagtgctccacactgagtacttggtctgatagggtgggcaacacctgttgggt 491

                                                                       
Query: 121 gttatttttgtttattttacttgctggtttgtgaccttgaaaatctcaactcgttgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gttatttttgtttattttacttgctggtttgtgaccttgaaaatctcaactcgttgacag 431

                                                                       
Query: 181 caagccagtgcccaccggccaaatctgttactgtgcataaagctttattggtccaaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caagccagtgcccaccggccaaatctgttactgtgcataaagctttattggtccaaagtc 371

                                                                       
Query: 241 taggccatctttatcacagcatctaggactgttgtcccctgctctgaatatttgaaaagt 300
           |||||||||   |||| ||||| |||||||||||||||||||| |||| |||||||||||
Sbjct: 370 taggccatcagcatcatagcatgtaggactgttgtcccctgctgtgaagatttgaaaagt 311

                                                                       
Query: 301 cactacaagtgacttcagaaccttgagaggaaagaaaagaaaaggcaaaaaaagtccacc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 310 cactacaagtgacttcagaaccttgagaggaaagaaaagaaaagggaaaaaaagtccacc 251

                                                                       
Query: 361 ggacccctaaactctcttaacttatttcccaatctacatagtaaaattcaggagctgaag 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agacccctaaactctcttaacttatttcccaatctacatagtaaaattcaggagctgaag 191

                                                                       
Query: 421 agatggtttggcaatttaaagtgcctggcactgtttcggaggatccgagtttggttccca 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 190 agatggtttggcaatttaaagtgcctggcactgtttcggaggatctgagtttggttccca 131

                                                                    
Query: 481 gcacccatactgggtagttcactgccatctctaactctagctccaagagcaccacac 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gcacccatactgggtagttcactgccatctctaactctagctccaagagcaccacac 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)