Query= MSMg01no332_i06.b1 MSMg01no332_i06.b1 CHROMAT_FILE:
MSMg01no332_i06.b1 PHD_FILE: MSMg01no332_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:02 2005
(434 letters)
>mm_chr5_77093684_77094515
Length = 832
Score = 803 bits (415), Expect = 0.0
Identities = 429/434 (98%), Gaps = 2/434 (0%)
Strand = Plus / Minus
Query: 1 attatatangttatatgttttatgtatcagtttaaattttaaataaaaaatttgaagatt 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 attatatacgttatatgttttatgtatcagtttaaattttaaataaaaaatttgaaga-t 627
Query: 61 tttttttcaaaacatctcaaaaaacaaaaaataagaaataaaaaaagagaaggaaattct 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 626 tttttttcaaaacatctcaaaaaac-aaaaataagaaataaaaaaagagaaggaaattct 568
Query: 121 gaagcagtttcagaacaatcctgctggccctgtcacagaactcccaggaactccagctgc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaagcagtttcaaaacaatcctgctggccctgtcacagaactcccaggaactccagctgc 508
Query: 181 gactgatcttccctgaagaccatgcatggctatggctgtggggtgtggtgtggtaaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gactgatcttccctgaagaccatgcatggctatggctgtggggtgtggtgtggtaaaatc 448
Query: 241 tcgtcgcctgcaaacagtgatctcaggatggtggcgtttctcccctttcatcttctccta 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 447 tcgtcgcctgcaaacagtgatctcaggatggtggcgtttcttccctttcatcttctccta 388
Query: 301 gttgaggaaaacacaggctaacaatcacatatgtgaacttttcattgataacttactgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gttgaggaaaacacaggctaacaatcacatatgtgaacttttcattgataacttactgac 328
Query: 361 gcgggctcttcctagacttcaataattaccaagggttcaagctgcccagcttcacccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcgggctcttcctagacttcaataattaccaagggttcaagctgcccagcttcacccaca 268
Query: 421 gcctgtctccagat 434
||||||||||||||
Sbjct: 267 gcctgtctccagat 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 832
Length adjustment: 9
Effective length of query: 425
Effective length of database: 823
Effective search space: 349775
Effective search space used: 349775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_i06.g1 MSMg01no332_i06.g1 CHROMAT_FILE:
MSMg01no332_i06.g1 PHD_FILE: MSMg01no332_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:02 2005
(674 letters)
>mm_chr5_76939050_76940123
Length = 1074
Score = 746 bits (386), Expect = 0.0
Identities = 411/426 (96%), Gaps = 12/426 (2%)
Strand = Plus / Plus
Query: 261 catgagtgttggggatttgaactcaggtgctcattcttgtacagcaagtatttacctgat 320
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 449 catgagtgttggggatttgaactcaggtgctcattcttgtacagcaagcacttacctgat 508
Query: 321 gagacatttctccagcctctagtgagtacagcttgggttttaggttttgggttttttggt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gagacatttctccagcctctagtgagtacagcttgggttttaggttttgggttttttggt 568
Query: 381 tttttgtttgtttgtttg--------ctttgttttgggttttttgctttgtttgtttgtt 432
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 569 tttttgtttgtttgtttgtttgtttgctttgttttgggttttttgctttgtttgtttgtt 628
Query: 433 t----taaatattgactatataaactaaggaaatgtttcaacatcaggtaacaaaggctg 488
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgttttaaatattgactatataaactaaggaaatgtttcaacatcaggtaacaaaggctg 688
Query: 489 ggcagatcttaggaaggtaccttccatttatttagctgtgtattagcagcttatataact 548
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggcagatcttaggaaggcaccttccatttatttagctgtgtattagcagcttatataact 748
Query: 549 gatctcacaaaaatgtcacagtcaccatgctgtctaaaatgatggtctaacgggagggtc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gatctcacaaaaatgtcacagtcaccatgctgtctaaaatgatggtctaacgggagggtc 808
Query: 609 agatcacataaataatttcctggggttataacaggaacttaagtgatcgatgttcttgtg 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agatcacataaataatttcctggggttataacaggaacttaagtgatcgatgttcttgtg 868
Query: 669 tgggtt 674
||||||
Sbjct: 869 tgggtt 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
