Query= MSMg01no333_i20.b1 MSMg01no333_i20.b1 CHROMAT_FILE:
MSMg01no333_i20.b1 PHD_FILE: MSMg01no333_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:45 2005
(349 letters)
>mm_chr5_148171233_148171981
Length = 749
Score = 619 bits (320), Expect = 0.0
Identities = 339/346 (97%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 1 cccaaaggaaaataaagtgctttctgcaattaaaggctgagaattgcatacattttttt- 59
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 199 cccaaaggaaaataaagtgctttcggcaattaaaggctgagaattgcatacatttttttt 258
Query: 60 -ccagttcttaccccttttctttcctttctttttctgcagggggtgcggctaggggagga 118
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 259 tccagttcttaccccttttcttttctttctttttctgcagggggtgcggctaggggagga 318
Query: 119 gacagggtctcttgtagccctgagtggcctagaattaggaggaggaagagtttttcgaga 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 gacagggtctcttgtagccctgagtggcctagaattaggagaaggaagagtttttcgaga 378
Query: 179 cagagtttctcaatgtagctctggctgtcctggaactcactctgtaaaccaggctggact 238
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 379 cagagtttctcaatgtagctctggctgtcctgaaactcactctgtaaaccaggctggact 438
Query: 239 caatgtgccactatgcccaatatcttttgtaaaagagagagtctctggcatctcagactg 298
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caatgtgccactatgcccagtatcttttgtaaaagagagagtctctggcatctcagactg 498
Query: 299 gccttgaacttgctacaagatggctttgaactcctgcttctgcctt 344
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gccttgaacttgctacaagatggctttgaactcctgcttctgcctt 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_i20.g1 MSMg01no333_i20.g1 CHROMAT_FILE:
MSMg01no333_i20.g1 PHD_FILE: MSMg01no333_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:45 2005
(612 letters)
>mm_chr5_148317938_148318957
Length = 1020
Score = 1058 bits (547), Expect = 0.0
Identities = 599/623 (96%), Gaps = 16/623 (2%)
Strand = Plus / Minus
Query: 2 ctccttggaagcttc-acaacttatgcctatagatgccagccctctttgtc-acacagaa 59
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 820 ctccttggaagcttcaacaacttatgcctatagatgccagccctctttgtcaacacagaa 761
Query: 60 caagctagggaactgtcccgaacgcagagcaaacctctggtttctaaagacatttaaaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 caagctagggaactgtcccgaacgcagagcaaacctctggtttctaaagacatttaaaag 701
Query: 120 taacaccatcagagacacactaagaacttataagcaaagctgctttaca--atcatcctt 177
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 700 taacaccatcagagacacactaagaacttataagcaaagctgctttacaatatcatcctt 641
Query: 178 aatatattccttcagtgaatttagtaacaaaaccatg----ttgaatccaagacacttcc 233
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 640 aatatattccttcagtgaatttagtgacaaaaccatgttgattgaatccaagacacttcc 581
Query: 234 acacatccagtatttcttcagactgtattctgctcagcatacagatttactaatagctaa 293
|||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 580 acacatccaggaagtcatcagactgtattctgctcagcatacagatctactaatagctaa 521
Query: 294 gattaatcactgtgatgcaaaatcaactacaagagaaaaagacacta----ccccaccct 349
||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 520 gattaatcactgtgatgcaaaatcaactacaagagaaaaagacactatgag----agtct 465
Query: 350 aaaggaattaatgatgtgttatggtatggaccacgagtacactctgcccccagctatgtg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaaggaattaatgatgtgttatggtatggaccacgagtacactctgcccccagctatgtg 405
Query: 410 tgtaatttacagacaaggagaagcctatgaaggctgggtgcccaaggtttaccagagact 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgtaatttacagacaaggagaagcctatgaaggctgggtgcccaaggtttaccagagact 345
Query: 470 ggtatcaagggtgatgttctagcacaacagaattgtaaagtctggaaaaaacagactatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggtatcaagggtgatgttctagcacaacagaattgtaaagtctggaaaaaacagactatg 285
Query: 530 tagcaaacaccactgcaaaagagcttcttagcaaaaactaaccagttgaagaagactgga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tagcaaacaccactgcaaaagagcttcttagcaaaaactaaccagttgaagaagactgga 225
Query: 590 aagttttcaacactctacttctc 612
|||||||||||||||||||||||
Sbjct: 224 aagttttcaacactctacttctc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1020
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1010
Effective search space: 608020
Effective search space used: 608020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
