Query= MSMg01no333_l02.b1 MSMg01no333_l02.b1 CHROMAT_FILE:
MSMg01no333_l02.b1 PHD_FILE: MSMg01no333_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:56 2005
(499 letters)
>mm_chr5_43868336_43869234
Length = 899
Score = 774 bits (400), Expect = 0.0
Identities = 406/408 (99%)
Strand = Plus / Minus
Query: 92 tgacatcattcttcagaataaagcatcaaattaccacatcgtcagattgtattgcattag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tgacatcattcttcagaataaagcatcaaattaccacatcgtcagattgtattgcattag 840
Query: 152 aatgtttggtttaaagattcctgtttgacttgaacttcataaacatcactaaattaattt 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aatgtttggtttaaagattcctgtttgacttgaacttcataaacatcactaaattaattt 780
Query: 212 cggcatgggattagaacagaatttctggttatttctgaaatggcctcgaatacacaccta 271
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ccgcatgggattagaacagaatttctggttatttctgaaatggcctcgaatacacaccta 720
Query: 272 ctattttgtactatgtatttggaacaaagatatagattaagtctgaaaatgctgacgatc 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctattttgtactatgtatttggaacaaagatatagattaagtctgaaaatgctgacgatc 660
Query: 332 gtttgtaccctgcagaatcaaaagtttattccagaattaaattcctctaaaatttacatt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtttgtaccctgcagaatcaaaagtttattccagaattaaattcctctaaaatttacatt 600
Query: 392 ttatttgaaattatatgtatatgttttctgcataggatgtgcttatgtgtatagtgccta 451
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 599 ttatttgaaattatatgtatatgttttctgtataggatgtgcttatgtgtatagtgccta 540
Query: 452 tactgtaagcttatgggactcacaactgcctgtaactgcagctcctgg 499
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tactgtaagcttatgggactcacaactgcctgtaactgcagctcctgg 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_l02.g1 MSMg01no333_l02.g1 CHROMAT_FILE:
MSMg01no333_l02.g1 PHD_FILE: MSMg01no333_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:56 2005
(495 letters)
>mm_chr5_43684794_43685688
Length = 895
Score = 864 bits (447), Expect = 0.0
Identities = 489/517 (94%), Gaps = 22/517 (4%)
Strand = Plus / Plus
Query: 1 cagatcttcaagacttcctccttttttataattgtgtgacatcactcaacatcagttcac 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cagatcttcaagacttccttcttttttataattgtgtgacatcactcaacatcagttcac 238
Query: 61 actgtgtttcaaaactcttgtcaggaaatggaagattcttaaaagaatccagccaccttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 actgtgtttcaaaactcttgtcaggaaatggaagattcttaaaagaatccagccaccttt 298
Query: 121 ctatgtctgtgtttatgatgctagcaggtagtatagtcacaataggcaaaaggaagatag 180
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 299 ctatgtccgtgtttatgatgctagcaggtagtgtagtcacaataggcaaaaggaagatag 358
Query: 181 atatcagtgtctgtcaatggatgctcaccaaaccacttgggatacagccatgcaaggaat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atatctgtgtctgtcaatggatgctcaccaaaccacttgggatacagccatgcaaggaat 418
Query: 241 attactcctcacaaaaagacactttgacattttctacaacatggatgaactttggagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 419 attactcctcacaaaaagacactttgacattttctacaacatggatgaactttggggaaa 478
Query: 301 ttacactaagaaaa----------------------tattaagtagcacaaggtgccatg 338
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 479 ttacactaagaaaaatactttgctcaagagcaaaaatattaagtagcacaaggtgccatg 538
Query: 339 agtagtaaactttgcagagacagaacagagtggagttttccagaggctgggagagttaat 398
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 539 agtagtaaactttgcagagacagaacggagtggagttttccagaggctgggagagttaat 598
Query: 399 tttagttcagactttgggatagatgaaaactggtgatggatggggcaagagtcacataaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttagttcagactttgggatagatgaaaactggtgatggatggggcaagagtcacataaa 658
Query: 459 actgtggatgtgtataatgatgtggtattcacagtac 495
|||||||||||||||||||||||||||||||||||||
Sbjct: 659 actgtggatgtgtataatgatgtggtattcacagtac 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
