BAC Information

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BAC

Clone NameMSMg01-333M03
Chromosome5 (Build37)
Map Location 27,394,280 - 27,576,156
singlet/doubletdoublet
Overlap geneDpp6
Upstream geneLOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik, B930011P16Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333M03.T7 (MSMg01no333_m03.b1)MSMg01-333M03.TJ (MSMg01no333_m03.g1)
ACCAG449427AG449428
length730758
length of high quality
(start - end)		372 (45 - 416)162 (75 - 236)
definitionCHROMAT_FILE: MSMg01no333_m03.b1 PHD_FILE: MSMg01no333_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:00 2005CHROMAT_FILE: MSMg01no333_m03.g1 PHD_FILE: MSMg01no333_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,575,790 - 27,576,156)(27,394,280 - 27,394,437)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGA
ATTCAGCTATCTGGCTTCCATATTCACATGGGGTCCTGTGATGGGAGTGG
GTATACTAAAAGTATAGGTACATTTCAGTCTTATTCTCTGGAGATGTGCA
CAGTATGTGGCCCTGTCTGGGTCTAATCACAGCATCGAGGACTTATGCAA
TGAGTCTCTTTCACCTTCTTAGCTCTTATGCCAAATAAGGCAATTATAGA
GCCAGAGATTTCCCTTGTTTCTGCCCCTTAACTGCACCTGGTGTGTTGGG
GGTGCTCCCTCAGCATCTGAGGCCATGAAGACAGGAGAGGATTTAGTCGG
ATCAGATCATCACACAGCTGGCTGGTGGCAGAGCAAAGGTCCTGGGGTTT
ATACAAAGACATTTCCACCCCCCCCCCAACGCGATGTTAGCAGCAGATAA
ATTTTAATAAAGTCTACCTCTCCTACAAAACAGAGGGTAACACAGATTTC
CAGGGCTCTGTCACACTCCCATTTTCCAGGTCCAGGGTACAGATCTCTCC
ATGTAAATCACTCTTCAAGCCCTTGTCCTCTGCTGTTCAACTCCCTGTCT
CTGGGAAGTAGGTCATGAAATAGAATAAATCAGGAATAAAAACAGAAATA
AAAACAAATTCACAAGGAAGGGGTCATGCCTTCTGAGAGAGTACTGAGAG
AGTAGTCTTGCCTTTCGTAAGGCTTGATCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAAAGTTCTGTTAATGGTTTGTTT
CACTTGCATTTCACAGTGAATAATGGAATACTAAGTAGAGGTATTTTTAG
AGAGATTTCACACTTATATGTGTTGGCTTAGATTGGTGATAGAATTTTGG
GACAGATATTATGTGTCCCTCTTCATTCACTTTCTGGGCTTGGCCATAGA
CATCTCTGTCCTAGTCTATTACACCTGTTTTGGAAGTCCTGTTCTCTTTG
CCCATATTTTATGCCTTTCTAAAACATTCATCACACGACTGGGGTGGCTT
GAGCACCATCTCCTTATTTTGGTTATTTTTCACAAATTACCCCTGGCCCG
CTTGGTGATGCCTTCATTCTCTCTACCCTTCTTTTTTTATTTTTTTTTTG
TCCCCCCCCCCCCCCCCNNNNNNNNNNNNNATGGNACTTTTTATTNTNTT
TAGATATCCACCCCTGGAATTAAAANTTTCAGGAGCCCGTGCGTGGGGGC
TCTCCCCCTTTGGCCATTTCGCCTGTCCCTCTAGTTTCTCGTATCCATCC
CTTTTNCCTGGTTGGGGCGGGTGTGCCCCCCCCCCCCCCCCTTTGGTTCG
CTAGTCTCTTCCTTATCTGTCCCCNTCGGCCGCCCCTTCCTCCCACCCTT
TTTCCCTCGTCGGGGGGTTTTTATCCCATTGCCTCCCCTCCCTTCTTTGT
ACCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_m03.b1 MSMg01no333_m03.b1 CHROMAT_FILE:
MSMg01no333_m03.b1 PHD_FILE: MSMg01no333_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:00 2005
         (372 letters)



>mm_chr5_27575586_27576357
          Length = 772

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctatctggcttccatattcacatggggtcctgtgatgggagtgggtatacta 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattcagctatcaggattccatattcacatggggtcctgtgatgggagtgggtatacta 512

                                                                       
Query: 65  aaagtataggtacatttcagtcttattctctggagatgtgcacagtatgtggccctgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaagtataggtacatttcagtcttattctctggagatgtgcacagtatgtggccctgtct 452

                                                                       
Query: 125 gggtctaatcacagcatcgaggacttatgcaatgagtctctttcaccttcttagctctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gggtctaatcacagcatcgaggacttatgcaatgagtctctttcaccttcttagctctta 392

                                                                       
Query: 185 tgccaaataaggcaattatagagccagagatttcccttgtttctgccccttaactgcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgccaaataaggcaattatagagccagagatttcccttgtttctgccccttaactgcacc 332

                                                                       
Query: 245 tggtgtgttgggggtgctccctcagcatctgaggccatgaagacaggagaggatttagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tggtgtgttgggggtgctccctcagcatctgaggccatgaagacaggagaggatttagtc 272

                                                                       
Query: 305 ggatcagatcatcacacagctggctggtggcagagcaaaggtcctggggtttatacaaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggatcagatcatcacacagctggctggtggcagagcaaaggtcctggggtttatacaaag 212

                  
Query: 365 acatttc 371
           |||||||
Sbjct: 211 acatttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_m03.g1 MSMg01no333_m03.g1 CHROMAT_FILE:
MSMg01no333_m03.g1 PHD_FILE: MSMg01no333_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:00 2005
         (162 letters)



>mm_chr5_27394080_27394641
          Length = 562

 Score =  298 bits (154), Expect = 1e-85
 Identities = 157/158 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaagttctgttaatggtttgtttcacttgcatttcacagtgaataatggaatactaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tttaaagttctgttaatggtttgtttcacttgcatttcacagtgaatactggaatactaa 260

                                                                       
Query: 61  gtagaggtatttttagagagatttcacacttatatgtgttggcttagattggtgatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagaggtatttttagagagatttcacacttatatgtgttggcttagattggtgatagaa 320

                                                 
Query: 121 ttttgggacagatattatgtgtccctcttcattcactt 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgggacagatattatgtgtccctcttcattcactt 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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