TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTAACACACTTTGTACTTTTTATCCCAGAATGTATTACATATT
AATGCGCTGATATTCAGTGAAGTGATTAGGGAGATGCTCTTCATGACTAT
TTATTGATTTTAACATGACTATAAATCTATCACAGAGACTACAGACTATA
TCATTTTTGCAAGGAACAAAAATTTAATATCACATGAAAATATCAGTATA
TTAAAAGACAGAGAGAGAAACACAGAGACACAAAGAAACAGTCAGACCGA
AGAGGAAGGTAAAAAAGAGATACCAGAGAGGGACAGGGAGAGGGAGAAGA
AGAGGGAGAAGAAGAGGGAAAGGGAGAATGTGTTTCCAAACTACTGAACA
CTTCAAAGTTCTCTTAGTCGTAAAGCTTCAGGACCTTCTTGCATTCTAGC
ATTCCAGTTTAACCACGCCTTGTACGACTTAAGTCTTCTGTAATTTAGGA
CACATTGAAAACTCTATTGTGACTTTAGCAGATTTCTTTTCATTATAAGC
TAGTCTATGTGGATTTATCTTATTTGCACCTCATGTTTTAAGTAATTCCA
TCACAGAACTGGCTTCTGCATAAGCAAATATCAAACAAGATTTGGTTCAT
GCTTTCCAACCAGTGATGACCAAGAACATATCTCAAGCCCAAGAAGTCAG
GTTACTTCACAATACAGTGATTGGAGCCTCCCTCAGCCTTTGAAGCAGCT
GAATCAGACTTTGN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTACCTTTTTGTCTAATATCCACT
TATTAGTGAGTACATACCATGCATGTCCTTTTGGGTCTGAGTTACCTTAC
TCAGGATGATATTATCTAGTTCCATCCATTTGACTACAAAACTCATAATG
CCCTTGTTCTTAATAGTGGAGTAGTACTCCATTGTGAAAATGAACCACAT
TTTCTGTATCCATTCTTCGGATGTGCNNNNNNNNNNNNNNNTCCAGATCT
GATCAAGCTAATAGACCGCTGGTGGCGCTTGATGCAAGAACTGCTCGACA
TTCATTNCAANNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNAT
ATTCTCTCTTTTTAAATCCCCCTTTATACCCCCGCTATTTTTACCCAATT
TTTTTNNNNNNNNNNNTNNNNTTNNNNNNNNNNNNCTTGTTTGGCCAATC
CCCCACCCACCCAATGAACCAATTCAAATTGGAAAGGGAATTGGGGTTTG
GCCCATCCCCATAAGTAAAGAAAAACTTTGGGGGTAAGATAAAAAAAGAA
AAATAATTATAAGAAAAATCTAGGNNTATTNNNNNNTGGGAAAAAAAAAA
ACTGGAGGGGAAAAGGAAACTCCCCGGGGGACNNTTCNNCCGCCCGCCAG
CAGAATGGTGTAAGCACGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGG

Query= MSMg01no333_m16.b1 MSMg01no333_m16.b1 CHROMAT_FILE:
MSMg01no333_m16.b1 PHD_FILE: MSMg01no333_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:03 2005
         (612 letters)



>mm_chr5_68686821_68687832
          Length = 1012

 Score =  764 bits (395), Expect = 0.0
 Identities = 455/483 (94%), Gaps = 17/483 (3%)
 Strand = Plus / Minus

                                                                        
Query: 144  ctacagactatatcatttttgcaaggaacaaaaatttaatatcacatgaaaatatcagta 203
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 ctacaggctatatcatttttgcaaggaacaaaaatttaatatcacatgaaaatatcagta 953

                                                                        
Query: 204  tattaaaagacagagagagaaacacagagacacaaagaaacagtcagaccgaagagg-aa 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 952  tattaaaagacagagagagaaacacagagacacaaagaaacagtcagaccgaagaggaaa 893

                                                                        
Query: 263  ggtaaaaaagagatacca------------gagagggacagggagagggagaagaagagg 310
            ||  ||| ||||| ||||            |||||||||||||||||||||||||||| |
Sbjct: 892  gg--aaagagagagaccagagagggagaaggagagggacagggagagggagaagaagatg 835

                                                                        
Query: 311  gagaagaagagggaaagggagaatgtgtttccaaactactgaacacttcaaagttctctt 370
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  cagaagaagagggaaagggagaatgtgtttccaaactactgaacacttcaaagttctctt 775

                                                                        
Query: 371  agtcgtaaagcttcaggaccttcttgcattctagcattccagtttaaccacgccttgtac 430
             ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 774  ggtcgtaaagcttcaggaccttctcgcattctggcattccagtttaaccacgccttgtac 715

                                                                        
Query: 431  gacttaagtcttctgtaatttaggacacattgaaaactctattgtgactttagcagattt 490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  gacttaagtcttctgtaatttaggacacattgaaaactctattgtgactttagcagattt 655

                                                                        
Query: 491  cttttcattataagctagtctatgtggatttatcttatttgcacctcatgttttaagtaa 550
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 654  cttttcattataagctagtctatgtggatttatcttgtttgcacctcatgttttaagtaa 595

                                                                        
Query: 551  ttccatcacagaact-ggcttctgcataagcaaatatcaaacaagatttggttcatgctt 609
            |||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 594  ttccatcataga-cttggcttctgcgtaagcaaatatcaaacaagatttggttcatgctt 536

               
Query: 610  tcc 612
            |||
Sbjct: 535  tcc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)