Query= MSMg01no334_f17.b1 MSMg01no334_f17.b1 CHROMAT_FILE:
MSMg01no334_f17.b1 PHD_FILE: MSMg01no334_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:45 2005
(612 letters)
>mm_chr5_12079115_12080126
Length = 1012
Score = 1077 bits (557), Expect = 0.0
Identities = 598/615 (97%), Gaps = 6/615 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaataccctgccagaatatgacttacagagaaaacaaaaacaaagacaaaa--- 60
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 686 ggaattcaataccctggcagaatatgacttacagagaaaacaaaaacaaaaacaaaaaca 627
Query: 61 ---acaaaaacaaaaacaaaaacaccaaaaccaaaaccaaataaaacaaagcaaaactca 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aagacaaaaacaaaaacaaaaacaccaaaaccaaaaccaaataaaacaaagcaaaactca 567
Query: 118 gtatttgtttcagggttagagctgtgcagctgcatggctttgtgccaaattggagagcta 177
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 566 gtatttgtttcagggttagagatgtgcagctgcatggctttgtgccaaattagagagcta 507
Query: 178 gtaggatagatccagaaaatagtgctcatctttgattatggatggcattatgataagttt 237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtaggatagatccagagaatagtgctcatctttgattatggatggcattatgataagttt 447
Query: 238 gtatctaatttgtcaattattaatattttagtgtaataacatttaatcaaggtatagaca 297
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 446 gtatctaatttgtcaattattaataatttagtgtaatagcatttaatcaaggtatagaca 387
Query: 298 gagtaactggaaatcttgagtagaattaaattctatgagaaagtgtagcatgtagttttt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 gagtaactggaaatcttgagtagaattaaattctatgagaaagtgtagcatgtagctttt 327
Query: 358 cccataccacctttgctcccactggagactctttaatctgtggataagagacacaaacag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 326 cccataccacctttgctcccactggagactctttaatctgtggataagagacacacacag 267
Query: 418 agtttttttcctctccaatttgccattgtggcacagttgctgggcacttctatctcccac 477
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtctttttcctcttcaatttgccattgtggcacagttgctgggcacttctatctcccac 207
Query: 478 ctggaaaagtatgcccatattaatttcttaactcagtctcttctaccttccctaaactta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctggaaaagtatgcccatattaatttcttaactcagtctcttctaccttccctaaactta 147
Query: 538 gtggctaaacccatctggtccctgccaaacatccatgcctacccacctgtggaagtgact 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gtggctaaacccatctggtccctgccaaacatccatgcctacccacctgtggaagtgact 87
Query: 598 ccatgctctggttcc 612
|||||||||||||||
Sbjct: 86 ccatgctctggttcc 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_f17.g1 MSMg01no334_f17.g1 CHROMAT_FILE:
MSMg01no334_f17.g1 PHD_FILE: MSMg01no334_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:45 2005
(606 letters)
>mm_chr5_11931565_11932571
Length = 1007
Score = 911 bits (471), Expect = 0.0
Identities = 587/675 (86%), Gaps = 78/675 (11%)
Strand = Plus / Plus
Query: 1 actatgaagtgcctttgttggcatttgatagaaatagcaattcaatagaaaaaaattact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 actatgaagtgcctttgttggcatttgatagaaatagcaattcaatagaaaaaaattact 193
Query: 61 tgaaattcttttcataaagattgatgaaaaaaaaagtaaaatgaagggttttgaagctta 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 194 tgaaattcttttcaaaaagattgatg-aaaaaaaagtaaaatgaagggttttgaaactta 252
Query: 121 tttataaagaataagttatgcaaaatgacaatcaaaacctgcaactattcat-------- 172
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 253 tttataaagaataagttattcaaaatgacaatcaaaacctgcaactattcattcactcaa 312
Query: 172 ------------------------------------------------------------ 172
Sbjct: 313 ctgagtggctagtgtttttaggaaatataaaaatagaatgcaattggtagattagaaagg 372
Query: 173 tcactcaactgagtggctagtgtttttaggaaatataaaaatagaatgcaattggtagat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcactcaactgagtggctagtgtttttaggaaatataaaaatagaatgcaattggtagat 432
Query: 233 tagaaaggtcataaaataaacaattcctcttaatcctaaagtacaaatacaagaaatact 292
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tagaaaggtcataaaatgaacaattcctcttaatcctaaagtacaaatacaagaaatact 492
Query: 293 ttttt-taaattatttttgccaggcaagggagcaaatgtctgtatttcccatacagagga 351
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttttaaaaaatatttttgccaggcaagggagcaaatgtctgtatttcccatacagagga 552
Query: 352 gttaagatgaaacagttcaaggaaagtctgagctatatgagaaacaagcaagaatagtac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 553 gttaagatgaaacagttcaaggaaagtctgagctatatgagaaacaagcaagaattttac 612
Query: 412 attttacctgctggttccggctttacttgccattatgcataaagcttactggtgcatgac 471
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attttacctgctggttctggctttacttgccattatgcataaagcttactggtgcatgac 672
Query: 472 tttctctggttcctatgaatgttttcttaaatacagtatgacatgacaagaaggggtccc 531
|||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 673 tttctctggttcctat--------tcttaaatgcagtatgacatgacaagaaggggtccc 724
Query: 532 cttagtgggtcctgctgaaggcatcctgcactgggatcccagccataagacagatctagt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttagtgggtcctgctgaaggcatcctgcactgggatcccagccataagacagatctagt 784
Query: 592 ataaaatgaggttta 606
|||||||||||||||
Sbjct: 785 ataaaatgaggttta 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
