BAC Information

Click to search

BAC

Clone NameMSMg01-334L07
Chromosome5 (Build37)
Map Location 102,975,871 - 103,159,548
singlet/doubletdoublet
Overlap geneArhgap24
Upstream geneNkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780
Downstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334L07.T7 (MSMg01no334_l07.b1)MSMg01-334L07.TJ (MSMg01no334_l07.g1)
ACCAG450135AG450136
length711716
length of high quality
(start - end)		513 (48 - 560)444 (74 - 517)
definitionCHROMAT_FILE: MSMg01no334_l07.b1 PHD_FILE: MSMg01no334_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:13 2005CHROMAT_FILE: MSMg01no334_l07.g1 PHD_FILE: MSMg01no334_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,975,871 - 102,976,381)(103,159,105 - 103,159,548)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAAGATCCGCG
GAATTCATCTCTGTGTTGCCACAGCCTCCATTATGAGGCCTCAACTGCTT
GTTCCTTGACTTGCTCATTACACAAAGAAATGGTGTGATGGAGTGGGGCC
CAAAAGAATACTATTTCACTCTTCAGTTTTCCTTAGTTAGCATGTTATCA
TCTTCTCCGTGAGACCAGCTTCTAGAGTCTAAGTCTAACATCTTTTCTTA
TGCACTTTAGTTGGTAAGTGAGCATATTTGCAAAGCCGTCTCTGCGTCCA
TACTCTTGTACTAATCTTCAGCTATGTGATTCAGTTTTACCATTTTCTAG
GTTCGTGCTTTATGACAGTTTTGGGTCTCAGGAAGTGTTTGTGCATTAAC
GCACAGCTATACATCTAAGAGCTGCTTCCCGGCCCCTCTGTTCTATAGCT
GACTAGGATCGAAGCAACACTGGGTGCTGACTTGTGGGCAGGAGACACAT
AAACAAGTGAGACGAAGACAAAACTAGGAAAGGTGAAATAGGGCACTGAG
ATGAGGTACAGTGGATGTGGAGGTGCAGAGTAAGAAGCACACACCCAAGT
GGATGCTCTGCGGTCACATGACATTTGAATGGAACTCCGAGCCAGAGAAG
AAGAAGAAGTACAAGAAGATGAGGAGTAGTAGCAAGAGAATTAGGATGAA
GTAATGTCTTG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGACTTCAGAGCCTATGTTAGTGAG
GAAACTATCCAAGGCTGTGCAGTGTGGGTGACATCTAGTTTTCTGCAGAG
CTGGGCATCCAGATACCAGGAAGGCACACACCCTGTCATGTCATCCTTCA
TGAAAACTCATATAAAGCTTAGGACAGATTTGTTGAGCAGATACCTAAGC
TGGCTTGGGACTGAAGCCATGAGACTAGATGACATTTTCAGAGGAAGAAA
AGCTGTGGAAGAAAATAAGACAGATGCAGAATTCAAATCAAGAACATAGG
AAGAAAACCACTGATTGCTGCAGAGGAGGCACAGAAGGAATCCCTGGGCA
CAAATAGAAGCAGAGACAAAATCTCTCACATCAAGAGGCAGAATTGATGG
CAAGGTGCCTGACCTGAGAGGACAGTGTGAATGGAGAAAACAGAAAGTAA
GGACAAAGACGAAACCCAGTTAAGACTGGTCACTAAACCAGCCATCCTCC
GCACCCTTCTTCAGGNAATCTTGGCCTTTGTGGTAAAGTTGAACACTGGC
ATAAGAGGGAAGCAAGGAAGCACAGGCAAGACCACAGACTTTTTTGCTGG
CACAAAAGAATAAAATGAATTGCCTGAATTTGAGTGTTCGGCATTTTTAG
TGCAACCGAATGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_l07.b1 MSMg01no334_l07.b1 CHROMAT_FILE:
MSMg01no334_l07.b1 PHD_FILE: MSMg01no334_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:13 2005
         (513 letters)



>mm_chr5_102975669_102976581
          Length = 913

 Score =  934 bits (483), Expect = 0.0
 Identities = 504/511 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcatctctgtgttgccacagcctccattatgaggcctcaactgcttgttccttga 62
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 ggaattcatctctgtgctgacacagcctccattatgaggcctcaactgcttgttctttga 262

                                                                       
Query: 63  cttgctcattacacaaagaaatggtgtgatggagtggggcccaaaagaatactatttcac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttgctcattacacaaagaaatggtgtgatggagtggggcccaaaagaatactatttcac 322

                                                                       
Query: 123 tcttcagttttccttagttagcatgttatcatcttctccgtgagaccagcttctagagtc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcttcagttttccttagttagcatgttatcatcttctccgtgagaccagcttctagagtc 382

                                                                       
Query: 183 taagtctaacatcttttcttatgcactttagttggtaagtgagcatatttgcaaagccgt 242
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 taagtctaacatctttttttatgcactttagttggtaagtgagcatatttgcaaagccat 442

                                                                       
Query: 243 ctctgcgtccatactcttgtactaatcttcagctatgtgattcagttttaccattttcta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctctgcgtccatactcttgtactaatcttcagctatgtgattcagttttaccattttcta 502

                                                                       
Query: 303 ggttcgtgctttatgacagttttgggtctcaggaagtgtttgtgcattaacgcacagcta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggttcgtgctttatgacagttttgggtctcaggaagtgtttgtgcattaacgcacagcta 562

                                                                       
Query: 363 tacatctaagagctgcttcccggcccctctgttctatagctgactaggatcgaagcaaca 422
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcatctaagagctgcttcctggcccctctgttctatagctgactaggatcgaagcaaca 622

                                                                       
Query: 423 ctgggtgctgacttgtgggcaggagacacataaacaagtgagacgaagacaaaactagga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgggtgctgacttgtgggcaggagacacataaacaagtgagacgaagacaaaactagga 682

                                          
Query: 483 aaggtgaaatagggcactgagatgaggtaca 513
           |||||||||||||||||||||||||||||||
Sbjct: 683 aaggtgaaatagggcactgagatgaggtaca 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no334_l07.g1 MSMg01no334_l07.g1 CHROMAT_FILE:
MSMg01no334_l07.g1 PHD_FILE: MSMg01no334_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:13 2005
         (444 letters)



>mm_chr5_103158905_103159748
          Length = 844

 Score =  835 bits (432), Expect = 0.0
 Identities = 441/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggacttcagagcctatgttagtgaggaaactatccaaggctgtgcagtgtgggtgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgggacttcagagcctatgttagtgaggaaactatccaaggctgtgcagtgtgggtgaca 585

                                                                       
Query: 61  tctagttttctgcagagctgggcatccagataccaggaaggcacacaccctgtcatgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 584 tctagttttctgcagagctgggcatccagataccaggaaggcacacacccaatcatgtca 525

                                                                       
Query: 121 tccttcatgaaaactcatataaagcttaggacagatttgttgagcagatacctaagctgg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cccttcatgaaaactcatataaagcttaggacagatttgttgagcagatacctaagctgg 465

                                                                       
Query: 181 cttgggactgaagccatgagactagatgacattttcagaggaagaaaagctgtggaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttgggactgaagccatgagactagatgacattttcagaggaagaaaagctgtggaagaa 405

                                                                       
Query: 241 aataagacagatgcagaattcaaatcaagaacataggaagaaaaccactgattgctgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aataagacagatgcagaattcaaatcaagaacataggaagaaaaccactgattgctgcag 345

                                                                       
Query: 301 aggaggcacagaaggaatccctgggcacaaatagaagcagagacaaaatctctcacatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aggaggcacagaaggaatccctgggcacaaatagaagcagagacaaaatctctcacatca 285

                                                                       
Query: 361 agaggcagaattgatggcaaggtgcctgacctgagaggacagtgtgaatggagaaaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agaggcagaattgatggcaaggtgcctgacctgagaggacagtgtgaatggagaaaacag 225

                                   
Query: 421 aaagtaaggacaaagacgaaaccc 444
           ||||||||||||||||||||||||
Sbjct: 224 aaagtaaggacaaagacgaaaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |