BAC Information

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BAC

Clone NameMSMg01-335A22
Chromosome5 (Build37)
Map Location 122,526,663 - 122,526,958
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693
Downstream geneMyl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335A22.T7 (MSMg01no335_a22.b1)MSMg01-335A22.TJ (MSMg01no335_a22.g1)
ACCAG450403AG450404
length785756
length of high quality
(start - end)		104 (72 - 175)529 (71 - 599)
definitionCHROMAT_FILE: MSMg01no335_a22.b1 PHD_FILE: MSMg01no335_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:41 2005CHROMAT_FILE: MSMg01no335_a22.g1 PHD_FILE: MSMg01no335_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAACTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGATGCTGTACCTTGGTGGCCAGTTGGATATTTATCTGCTTT
AGCCTTAAGATCTGCCGTTCTGAGCGTGTCTTCACGGAGATGATGATGCC
TGGGTGGGAGGGAGGGGAGGGGAGGCNTTACNNNCNNNACTCNNNANTGC
CTNCATGCNCCTCCTTCCATTTATTCCATCCCCGCCCACAAAGTCCTGGT
GTCGCTATGTTCCATCTACCCAAAACATGGAGAGAGGACGTGCATCCGCG
AGACCCGACATACTACCNCGCCANTTTTTTTTTNNGCCCNCCCCCCCCCC
AGCCCCCACAGAGGCCCTCACCCCCCTCTTCTTTTTTTATTCCTCTCCCC
NCNCGCANCCCCCCACCCCCCCCCCCCTGCTCTCTCCCCTTTTCCTCGCT
ACCCTTTCTCGAACTGAAGCTCCCTATCCTATACTCTTCACTTCTTTTAT
CCTCTCCGCCTTATCCCTTTCCTCTGTTCTTCTCCTTCCCCCTTCTCCCT
ACTTTTCCTTTTTTTCTTTCCCTTCCTTTTCCCCACCTTTTTCCCTTTTC
CCCCCCCTCCTCTATTTCCCTCCCGCCTTTCCTACTCCTTCCCTCTCTCT
TCTCCCCCTCTTTTCTCCTCCACCTCCTTTTCCCTGCTTTTCTCTCCCCC
CTTTACCTCTTCCTTCCTCTTCCTTCCTCTTCTCTCCCTCCCCTCCTCCC
CTCTTTTCTTCTCTTTCTCCCCTCCTCCTACACCN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTATCCGGAACCAGCAGGGAGGTTCAGTCC
AGGGATAATGAGGTCGTGACTCTGCATAATCTTTCCAGTAATGGTGTGCA
GGAGACAGAGCTTGTGTGACAGAACAGTCAAGACTCGAGACTGCCAGCAT
GCACAGGGCTCTAGGAGTTCCAGGGCTGGGGACAAGGTCCTGGTGTTGCT
ATGTTCCATATAATCAAAGCATGGAGTGTGGAGGTGGATCTGGGAAACTG
AGCATACAACTTTGGTAGAGACTGGTTTGTTTCTTTTTTCTTTTTTTCCT
TCAGTAGAGGGCCCCACTTCCGGCATTCTTGGGTAGACAGGAGCCCTGTG
GACCCTATTCGTCCTGAACTCTGCTTCACCCCCCTCAGTCTGGTATACAG
CAATGTCTGATGCCCCAGAGGGAAGGGGCAGACATCAGGAGCCCACCTGT
TCTAGACTTTGCCCTGCCCTCTCTGAGTCTGTGTACCAGCAGTTCTGCCA
ACCCACCAGAAGAGGTGGAACCAGTTTCTCAGACAGGGTTTCTCTGTGTA
GCCCTGGATGTCTTGGAACTCACTCTGTAGACCAGGCTGGCCTCTAACTC
ATAAATCTGTCTTGCTCTGTCTCCCAAGGGGTGGTATTAATGCTTTGCCC
CCTTATCCTTTTTTCACCGCATCTTTTTCTCCCTCCCACTTAAGTAGTCT
TTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_a22.g1 MSMg01no335_a22.g1 CHROMAT_FILE:
MSMg01no335_a22.g1 PHD_FILE: MSMg01no335_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:41 2005
         (529 letters)



>mm_chr5_122526463_122527391
          Length = 929

 Score =  480 bits (248), Expect = e-139
 Identities = 282/296 (95%), Gaps = 7/296 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatccggaaccagcagggaggttcagtccagggataatgaggtcgtgactctgcataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatccggaaccagcagggaggttcagtccagggataatgaggtcgtgactctgcataat 260

                                                                       
Query: 61  ctttccagtaatggtgtgcaggagacagagcttgtgtgacagaacagtcaagactcgaga 120
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ctttccagtaatggtgtgcgggagacagagcttgtatgacagaacagtcaagactcgaga 320

                                                                       
Query: 121 ctgccagcatgcacagggctctaggagttccagggctggggacaaggtcctggtgttgct 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctgccagcatgcacagggctctaggagttccagggctggggataaggtcctggtgttgct 380

                                                                       
Query: 181 atgttccatataatcaaagcatggagtgtggaggtggatctgggaaactgagcatacaac 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 381 atgttccatataatcaaagcatggagtgtgggggtggatctgggaaactgagcatccaac 440

                                                                   
Query: 241 tttggtagagactggtttgtttcttt-tttcttt-----ttttcc-ttcagtagag 289
           |||||||||||||||||||||| ||| ||| |||     |||||| ||||||||||
Sbjct: 441 tttggtagagactggtttgtttgtttgtttgtttgtttgttttcccttcagtagag 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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